Protein-binding peptide isolated from placenta growth factor

ABSTRACT

Embodiments of the invention are described, including materials and methods for making molecules and materials that have a specific binding domain of a PlGF2. Embodiments include, for instance, medicaments, biomaterials, biomolecules, molecular fusions, and vaccines.

CROSS REFERENCE TO RELATED APPLICATIONS

This patent application claims priority to U.S. Ser. No. 61/667,630filed Jul. 3, 2012, which is hereby incorporated by reference herein.

TECHNICAL FIELD

The technical field, in general, relates to peptides that bind toextracellular matrices via specific binding interactions.

BACKGROUND

The extracellular matrix (ECM) provides structural support for tissueand signaling capabilities for cells. The ECM plays an important role indevelopment and tissue repair.

SUMMARY OF THE INVENTION

As reported herein, it has been discovered that placenta growth factor(PlGF) exhibits specific binding activity towards ECM. PlGF is anangiogenic cytokine that exists in multiple splice variants. PlGF wasoriginally identified in the placenta, where it has been proposed tocontrol trophoblast growth and differentiation. PlGF is expressed duringearly embryonic development. PlGF has been shown to be expressed in thevillous trophoblast, while vascular endothelial growth factor (VEGF) isexpressed in cells of mesenchymal origin within the chorionic plate.PlGF is expressed in several other organs including the heart, lung,thyroid, skeletal muscle, and adipose tissue. PlGF acts as a potentstimulator of VEGF secretion by monocytes and significantly increasesmRNA levels of the proinflammatory chemokines interleukin-1 beta,interleukin-8, monocyte chemoattractant protein-1, and VEGF inperipheral blood mononuclear cells of healthy subjects. PlGF inducestumor angiogenesis by recruiting circulating hematopoietic progenitorcells and macrophages to the site of the growing tumors (Ribatti D,2008).

An embodiment is an isolated polypeptide comprising a sequence chosenfrom the group consisting of SEQ ID NO:4 having from 0 to 5 conservativesubstitutions, SEQ ID NO:5 having from 0 to 5 conservativesubstitutions, and subsequences thereof. Said subsequences may be chosenas exhibiting specific binding to one or more of fibrinogen,fibronectin, vitronectin, tenascin C, osteopontin, and fibrin. Adissociation constant may be specified, for example, wherein thespecific binding of the polypeptide to fibrinogen has a dissociationconstant (KD) of less than about 100 nM, or less than about 40 nM, orless than about 25 nM.

An embodiment is a biologic delivery vehicle comprising a molecularfusion of a biological agent and a peptide comprising a sequence orsubsequence of at least 6 residues of a sequence chosen from the groupconsisting of SEQ ID NO: 4 having from 0 to about 15% conservativesubstitutions and SEQ ID NO:5 having from 0 to about 15% conservativesubstitutions. As explained in more detail herein, the peptide exhibitsspecific binding to one or more of, or all, of the extracellular matrixmolecules selected from the group consisting of fibrinogen, fibronectin,vitronectin, tenascin C, osteopontin, fibrin, collagen, Collagen I, andheparin sulfate. In fact, the tested peptides exhibited specific bindingto all of said extracellular matrix molecules. Examples of biologicagents are those chosen from the group consisting of a protein, aprotein drug, a marker, an immunoagent, a chemokine, a cytokine, and acell adhesion peptide. The term cytokine, as used herein, includesgrowth factors and morphogens.

An embodiment is a biomaterial comprising a matrix, with the matrixcomprising a polypeptide comprising a sequence chosen from the groupconsisting of SEQ ID NO:4 having from 0 to 5 conservative substitutions,SEQ ID NO:5 having from 0 to 5 conservative substitutions, and allsubsequences thereof, said peptide exhibiting specific binding to anextracellular matrix molecule. The matrix may be natural or syntheticand covalently crosslinked, crosslinked without covalent binds, or freeof crosslinks.

An embodiment is a medicament comprising a peptide, vehicle, orbiomaterial comprising a PlGF2, e.g, a domain of PlGF2. The medicamentmay be used, e.g., in a medical treatment, to make a medicalcomposition, e.g., as a vaccine, for drug delivery, wound healing, andtissue healing, e.g., healing of a bone, fistula, or an ulcer.

BRIEF DESCRIPTION OF THE FIGURES

FIG. 1: A domain within PlGF2 (PlGF2₁₂₃₋₁₄₄) strongly and promiscuouslybinds ECM proteins. (a) GF binding to ECM proteins, measured by ELISA. Asignal over 0.1 (gray box) was considered as representative of aspecific binding. PlGF2 strongly binds all ECM proteins tested (graybars). (b) Alignment of the protein sequences of the splice variantsPlGF2 and PlGF-1 (which does not bind). PlGF2 contains an additional 21amino-acid insert (PlGF2₁₂₃₋₁₄₄, in gray) located near the C-terminus.(c) Binding of PlGF2₁₂₃₋₁₄₄ to ECM proteins when fused to a non-bindingmodel protein, GST (GST-PlGF2₁₂₃₋₁₄₄). A scrambled version ofPlGF2₁₂₃₋₁₄₄ (GST-PlGF2_(scr)) does not bind ECM proteins. In (a) and(c), n≧3, mean±SEM. The alignment shows sequences of PlGF-1 (PlGF-1LPAVPPQQWALSAGNGSSEVEVVPFQEVWGRSYCRALERLVDVVSEYPSEVEHMFSPSCVSLLRCTGCCGDENLHCVPVETANVTMQLLKIRSGDRPSYVELTFSQHVRCECRPLREKMKPERCGDAVPRR (SEQ ID NO:58) as compared to PlGF2(LPAVPPQQWALSAGNGSSEVEVVPFQEVWGRSYCRALERLVDVVSEYPSEVEHMFSPSCVSLLRCTGCCGDENLHCVPVETANVTMQLLKIRSGDRPSYVELTFSQHVRCECRPLREKMKPERRRPKRGKRRREKQRPTDCHLCGDAVPRR, SEQ ID NO:59).

FIG. 2: Binding of various GST-PlGF2₁₂₃₋₁₄₄ fragments to fibronectin,collagen I, heparan sulfate, and neuropilin-1. (a) Design ofGST-PlGF2₁₂₃₋₁₄₄ fragments. (b) Binding of GST-PlGF2₁₂₃₋₁₄₄ fragments tofibronectin, collagen I, heparan sulfate, and neuropilin-1. The depictedalignments include fragments of GST-PlGF2:RRRPKGRGKRRREKQRPTDCHLCGDAVPRR (SEQ ID NO:60), RRRPKGRGKRRREKQRPTDCHL(SEQ ID NO:61), RRPKGRGKRRREKQRPTD (SEQ ID NO:62), RRRPKGRGKRRREKQ (SEQID NO:1), GKRRREKQ (SEQ ID NO:2), and RRRPKGRG (SEQ ID NO:3).

FIG. 3: The heparin-binding domain of VEGF-A165 is substituted withPlGF2₁₂₃₋₁₄₄ (black box) to generate VEGF-A121-PlGF2₁₂₃₋₁₄₄ (SEQ ID NO:7). PlGF2₁₂₃₋₁₄₄ is fused to the C-terminus of PDGF-BB to generatePDGF-BB-PlGF2₁₂₃₋₁₄₄ (SEQ ID NO: 9) PlGF2₁₂₃₋₁₄₄. (gray box) containinga point mutation (Cys₁₄₂ to Ser) is inserted at the C-terminus of BMP-2to generate BMP-2-PlGF2₁₂₃₋₁₄₄*(SEQ ID NO: 13).

FIG. 4: Has 2 panels. (a) Cytokines-PlGF2_(123-144(*)) binding to ECMproteins (fibronectin, vitronectin, tenascin C, osteopontin, collagen I,fibrinogen) and heparan sulfate measured by ELISA. ELISA plates werecoated with cytokines and further incubated with ECM proteins atincreasing concentration (0.02 to 320 nM). Bound ECM proteins weredetected using antibodies. The binding curve was fitted by non-linearregression to obtain the dissociation constant (K_(D)) usingA_(450 nm)=Bmax*[concentration]/(K_(D)+[concentration]). n=3, mean±SEM.(b) Cytokines-PlGF2_(123-144(*)) are retained in fibrin matrix. Fibrinmatrices were made in the presence of wildtype cytokines (PlGF-1, PlGF2,VEGF-A121, VEGF-A165, PDGF-BB, and BMP-2) or modified cytokines(VEGF-A121-PlGF2₁₂₃₋₁₄₄, PDGF-BB-PlGF2₁₂₃₋₁₄₄, orBMP-2-PlGF2_(123-144(*)) and further incubated in 8 volumes ofphysiological buffer for 7 days. The buffer was changed every day, andcumulative released of cytokines were quantified for each day. WildtypePlGF-1, VEGF-A121, VEGF-A165, PDGF-BB, and BMP-2 were quickly released,while VEGF-A121-PlGF2₁₂₃₋₁₄₄, PDGF-BB-PlGF2₁₂₃₋₁₄₄, andBMP-2-PlGF2_(123-144*) were sequestered in the matrix.

FIG. 5: In vitro, PlGF2₁₂₃₋₁₄₄-fused GFs shows similar bioactivitycompared to wild-type GFs. (a) Human ECs were stimulated with VEGF-A121,VEGF-A165, or VEGF-A-PlGF2₁₂₃₋₁₄₄, and (b) human mesenchymal stem cellswere stimulated with PDGF-BB or PDGF-BB-PlGF2₁₂₃₋₁₄₄. Phosphorylated GFreceptors (VEGFR-2 and PDGFR-β) were quantified by ELISA (n=3,mean±SEM). The insertion of the PlGF2₁₂₃₋₁₄₄ into VEGF-A and PDGF-BB donot alter their signaling. Moreover, the insertion of PlGF2₁₂₃₋₁₄₄ intoVEGF-A121 increases its activity to the level of VEGF-A165. As it is thecase for VEGF-A165, this increased activity on receptor phosphorylationis most likely due the binding of PlGF2₁₂₃₋₁₄₄ to neuropilin-1, whichincreases VEGF-A potency in stimulating VEGFR-2 phosphorylation (MigdalM, et al., 1998; Pan Q, et al., 2007; Whitaker G B, et al., 2001). TheStudent t-test was used for statistical comparisons; *p<0.05, **p<0.01.(c) BMP-2-PlGF2_(123-144*) was evaluated by its ability to promote ALPactivity in human mesenchymal stem cells (induction of osteoblasticdifferentiation). Cellular ALP was quantified after 14 days of culturein presence of BMP-2 or BMP-2-PlGF2_(123-144*). No differences in cellnumber and ALP activity were observed between cells treated with BMP-2or BMP-2-PlGF2_(123-144*). Results are expressed as ng of ALP/10 k cells(n=4, mean±SEM).

FIG. 6: PlGF2₁₂₃₋₁₄₄-fused GFs display enhanced affinity for ECMcomponents. (a) Affinity (shown is K_(D)) of wild-type versusPlGF2₁₂₃₋₁₄₄-fused GFs for ECM proteins and heparan sulfate. n=3,mean±SEM. (b-f) PlGF2₁₂₃₋₁₄₄-fused GFs are retained at the site ofdelivery for an extended period relative to wild-type GFs. (b) VEGF-A165and VEGF-A-PlGF2₁₂₃₋₁₄₄ retention when injected subcutaneously in theback skin of mice. n=6 per time point, mean±SEM. (c-f) Wildtype andPlGF2₁₂₃₋₁₄₄-fused GF retention when placed in 5 mm diameter defects inthe mouse back skin (c,d) or mouse calvarium (e,f) filled with a fibrinmatrix. Retention after 3 and 6 days in the fibrin matrix (gray bars)and the tissue surrounding the defect (black bars, 2 mm farther). n≧4per time point, mean±SEM. For all panels, Student's t-test; **p<0.01,***p<0.001.

FIG. 7: VEGF-A-PlGF2₁₂₃₋₁₄₄ and PDGF-BB-PlGF2₁₂₃₋₁₄₄ induce greater skinwound healing and angiogenesis than wildtype VEGF-A and PDGF-BB. (a-j)Delivering low doses (200 ng of each, combined) of VEGF-A-PlGF2₁₂₃₋₁₄₄and PDGF-BB-PlGF2₁₂₃₋₁₄₄ promoted skin-wound healing in diabetic mice,while the same doses of wild-type VEGF-A165 and PDGF-BB did not.Full-thickness back-skin wounds (6 mm diameter) were treated with GFsdelivered topically (at day 0, 3, and 6 for wounds analyzed at day 10;at day 0, 3, 6, and 9 for wounds analyzed at day 15) or delivered oncein a fibrin matrix. Six different groups were tested: topically, PBSvehicle only, VEGF-A165+PDGF-BB, andVEGF-A-PlGF2₁₂₃₋₁₄₄+PDGF-BB-PlGF2₁₂₃₋₁₄₄; in fibrin, fibrin only, fibrincontaining VEGF-A165+PDGF-BB, and fibrin containingVEGF-A-PlGF2₁₂₃₋₁₄₄+PDGF-BB-PlGF2₁₂₃₋₁₄₄. After 10 and 15 days (topicalgroups; a-b), or 7 and 10 days (fibrin groups; f-g), wound closure andgranulation tissue formation were evaluated by histology. All points aremean±SEM (n=8-10 wounds per group per time point. Student's t-test;*p<0.05, **p<0.01, ***p<0.001. (c,h) Representative histology at 10 daysfor the fibrin groups and at 15 days for the topical groups (hematoxylinand eosin staining). Black arrows indicate wound edges; red arrowsindicate tips of healing epithelium tongue. The granulation tissue,stained in pink-violet. Muscle under the wounds is stained in pink-red.Scale bar=1 mm. (d,e,i,j) Quantification of the angiogenesis within thegranulation tissue. After 10 and 15 days (topical groups; d,e), or 7 and10 days (fibrin groups; I,J), wound tissues were stained for ECs (CD31⁺cells) and SMCs (desmin⁺ cells); dual staining indicates stable vascularmorphology (n≧4 per time point, mean±SEM). Wild-type GFs were comparedto PlGF2₁₂₃₋₁₄₄-fused GFs using the Student's t-test; *p<0.05, **p<0.01,***p<0.001.

FIG. 8: VEGF-A-PlGF2₁₂₃₋₁₄₄ induces much less vascular permeability thanthe same dose of wild-type VEGF-A165 (10 μg). (a) The graphs showmeasurement of vascular permeability in the mouse ear skin. n≧4,mean±SEM. For statistical comparisons, VEGF-A165 was compared toVEGF-A-PlGF2₁₂₃₋₁₄₄ using non-parametric Mann-Whitney U test; *p<0.05.(b,c) Representative images of the mouse ear skin vasculature 20 minafter VEGF-A application. Permeability induced by VEGF-A is visualizedby the red-labeled dextran leaking from the vessels. Scale bar=0.2 mm.

FIG. 9: Delivering PDGF-BB-PlGF2₁₂₃₋₁₄₄ and BMP-2-PlGF2_(123-144*)induce greater bone regeneration in the rat than wild-type PDGF-BB andBMP-2. Critical-size calvarial defects (6 mm diameter) were treated withGFs delivered topically or in a fibrin matrix. Six different groups weretested: topically, saline vehicle only, BMP-2+PDGF-BB, andBMP-2-PlGF2₁₂₃₋₁₄₄*+PDGF-BB-PlGF2₁₂₃₋₁₄₄; and in fibrin, fibrin only,fibrin containing BMP-2+PDGF-BB, and fibrin containingBMP-2-PlGF2₁₂₃₋₁₄₄*+PDGF-BB-PlGF2₁₂₃₋₁₄₄. The doses were 1 μg of eachGF, combined, for the groups treated topically to the dura and 200 ng ofeach GF, combined, for the groups with fibrin. (a-d) Four weeks aftertreatment, bone repair was measured by μCT as bone volume and coverageof the defect (a,b show groups topical groups; c,d show fibrin groups).(e-j) Representative calvarial reconstructions. e, saline vehicle; f,BMP-2+PDGF-BB; g, BMP-2-PlGF2₁₂₃₋₁₄₄*+PDGF-BB-PlGF2₁₂₃₋₁₄₄; h, fibrinonly, i, fibrin with BMP-2+PDGF-BB; j, fibrin withBMP-2-PlGF2₁₂₃₋₁₄₄*+PDGF-BB-PlGF2₁₂₃₋₁₄₄). The defect area is shaded.Data are means±SEM (n=6 per condition). For statistical comparisons,wild-type GFs were compared to PlGF2₁₂₃₋₁₄₄-fused GFs using theStudent's t-test; **p<0.01, *** p<0.001.

DETAILED DESCRIPTION

As reported herein, it has been discovered that placenta growth factor(PlGF) exhibits specific binding activity towards ECM. Aspects of theinvention include PlGF polypeptides, molecular fusions of PlGF fordelivery of biologics, biomaterials incorporating PlGFs, and drugdelivery. The PlGF polypeptides may include or be limited to, e.g., oneor more domains or fragments of PlGF.

Fibronectin

Fibronectin (FN) is widely expressed by multiple cell types and iscritically important in many ECM-dependent (Krammer A, et al., 2002)processes in the vertebrate, by playing important roles in celladhesion, migration, growth and differentiation (Mao Y and SchwarzbauerJ E, 2005; Pankov R and Yamada K M, 2002). FN is a dimeric glycoproteincomposed of two nearly identical 230-270 kDa subunits linked covalentlynear their C-termini by a pair of disulfide bonds. Each subunit consistsof three types of repeating modules, type I, II and III. These modulescomprise functional domains that mediate interactions with other ECMcomponents, with cell surface receptors and with FN itself. FN contains12 type I repeats, 2 type II repeats and 15-18 type III repeats. FN canbe subdivided into two forms, soluble plasma FN (abundant solubleconstituent of plasma [300 μg/mL]) and less-soluble cellular FN. PlasmaFN is secreted by hepatocytes and enriched in blood whereas cellular FNis secreted by fibroblasts and many other cell types and is incorporatedinto a fibrillar matrix at the cell surface. Cellular FN consists of amuch larger and more heterogeneous group of FN isoforms that result fromcell-type specific splicing patterns producing FNs with differentcell-adhesive, ligand-binding, and solubility properties that provide amechanism for cells to precisely alter the composition of the ECM in adevelopmental and tissue-specific manner.

FN is a ligand for several members of the integrin receptor family. Themost well studied recognition sequence, the tripeptide RGD, is locatedin the 10^(th) type III repeat (FN III10). The recognition of thissimple tripeptide sequence is complex and depends on flanking residues,its three dimensional presentation and individual features of theintegrin-binding pockets. For example, a second site in the 9^(th) typeIII repeat (FN III9), the “synergy site” comprising the pentapeptidePHSRN (SEQ ID NO:50) (Mardon H J and Grant K E, 1994), promotes specificα5β1 integrin binding to FN and in FN III9-10, via interactions with theα5 subunit (Mould A P, et al., 1997) whereas αvβ3 integrin binding toRGD is independent of the synergy site (Danen E H, et al., 1995).Integrin α5β1 is the initial receptor mediating assembly of FN infibrillar matrix formation (Mao Y and Schwarzbauer J E, 2005; Pankov Rand Yamada K M, 2002).

In addition to integrin binding, FN also binds cytokines. The secondheparin binding domain of FN (FN III12-14) binds most growth factors(cytokines capable of stimulating cellular growth) from theplatelet-derived growth factor and fibroblast growth factor families,and some growth factors from the transforming growth factor beta andneurotrophin families (Martino M M and Hubbell J A, 2010).

Although FN molecules are the product of a single gene, the resultingprotein can exist in multiple forms that arise from alternative splicingof a single pre-mRNA that can generate as many as 20 variants in humanFN. A major type of splicing occurs within the central set of type IIIrepeats (FN III7 to FN III15). Exon usage or skipping leads to inclusionor exclusion of either of two type III repeats—EDB (also termed EIIIB orEDII and located between FN repeats III7 and III8) and EDA (also calledEIIIA or EDI and located between FN repeats III11 and III12). Thealternatively spliced EDA and EDB domains are almost always absent fromplasma FN. Binding of α₄β₁ as well as α₉β₁ to an EDGIHEL sequence (SEQID NO: 51) located within the alternatively spliced EDA segment has beenreported, suggesting a possible adhesive function for the increasedEDA-containing FN species. FN EDA has been explored as a platform forsubunit vaccines. Based on the observation that FN EDA ligates andactivates Toll-like receptor 4 (TLR4), one research group has exploredusing FN EDA as an adjuvant DAMP in subunit vaccines, generating thefusion protein FN III EDA-antigen (Lasarte J J, et al., 2007). A fusionprotein containing EDA and the MHC I epitope SIINFEKL derived fromovalbumin at the C-terminus as well as a fusion protein containing EDAand the full ovalbumin improved ovalbumin presentation by DCs andinduced cytotoxic response in vivo. These EDA recombinant proteins wereshown to protect mice from a challenge with tumor cells expressingovalbumin. In spite of a useful effect of FN EDA in recombinant subunitvaccines, the adjuvancy of FN EDA has not been adequate to conferprotection in viral challenge models in the mouse (Mansilla C, et al.,2009). Indeed, a combination with another adjuvant, poly(I:C), andanti-CD40 was needed to downregulate intrahepatic expression ofhepatitis virus RNA. As such, FN EDA has been found to be insufficientlypotent for the arts of vaccinology.

Tenascin C

Tenascin C (TNC) is a large multifunctional extracellular matrixglycoprotein that is present during development and re-expressed inadult life in the case of tissue remodeling, such as wound healing(Trebaul A, et al., 2007), cancer (Orend G, 2005), and inflammation(Udalova I A, et al., 2011). During development, tenascin C plays ahighly restricted and dynamic role in the patterning of the neural andvascular networks and the skeleton. It has shown to affect celladhesion, proliferation, and migration via direct interaction with cellsor indirectly through binding to other extracellular matrix molecules,such as fibronectin (Jones F S and Jones P L, 2000).

In a healthy adult organism, tenascin C is produced in a tightlycontrolled, rapid, and transient manner and contained to specificlocations where tissue repair, such as wound healing and nerveregeneration (Joester A and Faissner A, 2001), is necessary andinfection needs to be resolved (Udalova I A, et al., 2011). However, inthe case of uncontrolled tenascin C production, this molecule becomespathological resulting in abnormal tissue growth, such as cancer,restenosis after percutaneous coronary angioplasty (Imanaka-Yoshida K,et al., 2001) and stent implantation, fibrotic diseases, chronic wounds,cardiovascular diseases (Golledge J, et al., 2011), and autoimmunediseases (Udalova I A, et al., 2011). Recently, tenascin C has beenlinked to cardiac and arterial injury, tumor angiogenesis and metastasis(O'Connell J T, et al., 2011; Oskarsson T, et al., 2011), as well as inmodulating stem cell behavior (Midwood K S, et al., 2011). In the caseof cancer metastasis, it has been shown that cancer cells, responsiblefor metastasis, produce tenascin C, with inhibition of this tenascin Cproduction resulting in reduced metastasis (Oskarsson T, et al., 2011).Therefore, tenascin could be an important target in the development ofdiagnostic and therapeutic treatments, especially when particularfunctions in this large molecule can be defined and localized to anarrowed, specific region.

Human tenascin C is a disulfide-bonded hexabranchion containing 4 majordomains: First, an assembly domain at the N-terminal forms a coiled coilstructure and interchain disulfide bonds that mediates the hexamerformation. Second, a series of 14.5 epidermal growth factor-likerepeats, which are between 30 and 50 amino acids long and each containsix cysteines, have shown to obtain anti-adhesive properties. Third, aseries of 15 fibronectin type III repeats, which are approximately 90amino acids long and form two sheets of antiparallel beta-strands,contain several integrin binding regions (Jones F S and Jones P L,2000). Fourth, a fibrinogen like globular domain is located at the Cterminal (Midwood K S, et al., 2011; Udalova I A, et al., 2011). Thisfibrinogen-like globular domain has been shown to agonize TLR4 (MidwoodK, et al., 2009). As such, this domain is a signal of danger to the bodyand initiates immunological reactions.

The fibronectin type III domain region of tenascin has shown a largevariability due to alternative splicing depending on the TNC source(Jones F S and Jones P L, 2000). The numbers (x-y) of fibronectin typeIII domains of TNC will be defined in this report as TNC IIIx-y. DomainTNC III3 (Peng Q, et al., 2009) contains an RGD peptide and multipleintegrin binding domains (for example: α_(v)β₃, α₉β₁, α₃β₆, α₈β₁(Yokosaki Y, et al., 1998), α_(x)β₁, α₈β₁) (for a large variety of celltypes (for example: smooth muscle cells, endothelial cells, neurons,astrocytes, glioma) (Jones F S and Jones P L, 2000). Domain TNC III5 hasdemonstrated to bind heparin (Weber P, et al., 1995). As reportedherein, the domain TNC III5, and longer domains comprising the TNC III5domain such as TNC III1-5 and TNC III3-5, have been shown to bindchemokines.

Fibrinogen and Fibrin

Fibrinogen is a soluble plasma glycoprotein that is synthesized by theliver and the precursor protein during blood coagulation. Theproteolytic enzyme thrombin, coagulation factor II, will polymerizefibrinogen into fibrin during coagulation by cleaving fibrinopeptidesfrom its central domain, preventing physicochemical self-assembly orpolymerization of the molecule (Weisel J W, 2007). Fibrin issequentially chemically cross-linked by factor XIIIa forming the primarystructural protein of a viscoelastic blood clot (Mosesson M W, 2005),and functioning as a specialized provisional protein network that isformed principally in spontaneous tissue repair. The stability of fibrindepends on its interplay with molecular/cellular components of thehemostatic system (Hantgan R R, et al., 1994). In addition tocross-linking fibrin to itself, factor XIIIa cross-links other adhesiveproteins into the blood clot. Fibrin can bind several cell-adhesionreceptors such as integrins and notably promotes the adhesion ofplatelet and leukocytes such as monocytes and neutrophils (Flick M J, etal., 2004; Ugarova T P and Yakubenko V P, 2001).

Fibrin matrices were one of the first biomaterials used to preventbleeding and promote wound healing (Janmey P A, et al., 2009). Fibrin isavailable from autologous sources and from cryoprecipitated pooled humanblood plasma. Today, fibrin is one of the most used hydrogel in theclinic. The complex fibril structure and cross-linked character offibrin matrix can be controlled by the details of its formation (LorandL and Graham R M, 2003; Standeven K F, et al., 2007; Weisel J W, 2004).Importantly, in contrast to fibrillar collagen matrices where cellmigration occurs both through mechanisms that are dependent andindependent of proteolytic degradation, cell migration in fibrin isalmost exclusively dependent upon cell-associated proteolytic activity(essentially from plasmin and matrix metalloproteinases (Mosesson M W,2005)). One of the main advantages of fibrin is that several proteinsare naturally incorporated into fibrin matrix during the coagulationsuch as fibronectin and alpha-2-plasmin inhibitor, by covalentcross-linking via the transglutaminase factor XIIIa (Mosesson M W,2005). Therefore, this natural reaction can be easily exploited tofunctionalize fibrin with multiple cell-signaling molecules (PattersonJ, et al., 2010; Schense J C and Hubbell J A, 1999). In addition,fibrinogen is known to possess specific interactions with fibroblastgrowth factor (FGF)-2, VEGF-A165 and insulin-like growth factor bindingprotein (IGFBP)-3 (Peng H, et al., 2004; Sahni A, et al., 1998; Sahni A,et al., 2006; Werner S and Grose R, 2003).

Fibrin is a useful base matrix, and heparin binding peptides andmolecular fusions described herein may be used with the same. Othermaterials may also be engineered to include TG or moieties that interactwith transglutaminases to receive a TG molecular fusion. U.S. Pat. Nos.7,241,730, 6,331,422, U.S. Pat. No. 6,607,740, U.S. Pat. No. 6,723,344,US Pub 2007/0202178, US Pub 2007/0264227 are hereby incorporated hereinby reference for all purposes; in case of conflict, the specification iscontrolling.

Fibrin matrices are subject to degradation by proteases in vivo, andprotease inhibitors are frequently formulated in fibrinogen/fibrinmatrixes to prolong their lifetime in vivo. This renders the fibrinmatrices more useful in applications of tissue adhesives and sealants,and in applications of tissue engineering. One such protease inhibitoris aprotinin. A fibrin-binding form of aprotinin has been engineered byincluding a factor XIIIa substrate within a fusion protein comprisingaprotinin (Lorentz K M, et al., 2011).

Matrices are useful for purposes of sustained release of drugs. Drugsmay be entrapped in the matrix and slowly diffuse from the matrix.Affinity may be engineered between a drug and components of the matrix.For example, affinity for heparin has been used to prolong the releaseof heparin-binding cytokines from fibrin-based matrices, incorporatingbinding sites for heparin into the fibrin matrix and employing heparinas an intermediate in that binding interaction (Sakiyama S E, et al.,1999).

Tissue Repair and Regeneration

After damage, tissue repair or regeneration is the result of aspatio-temporal coordination of cell fate processes that are controlledby a multitude of cell-signaling events coming from the extracellularmicroenvironment and recruited cells at the site of injury (Gurtner G C,et al., 2008). Within a biomechanical context provided by this elasticmilieu (Discher D E, et al., 2009), cells adhere by receptor-mediatedinteractions with extracellular matrix components such as fibronectinand laminin (among many others), mediated by specialized adhesionreceptors such as integrins and others (Berrier A L and Yamada K M,2007). These receptors transmit stress from the extracellular matrix,through the membrane, to the cytoskeleton within the cell in a dynamicand concerted manner (Hinz B, 2009). The adhesion receptors do much morethan transmit stress, however; in particular within clusters of adhesionreceptors in the membrane, biochemical signal transduction takes placethrough kinase activation and other mechanisms (Berrier A L and Yamada KM, 2007; Hinz B, 2009). In addition to adhesion proteins, theextracellular matrix also sequesters and presents a number ofmorphoregulatory molecules including, morphogens, cytokines, and growthfactors, which control processes of cell division, and/or migration,and/or differentiation, and/or multicellular morphogenesis (Discher D E,et al., 2009; Schultz G S and Wysocki A, 2009). Morphogens, cytokines,and growth factors are powerful soluble signaling molecules, becausethey can change cell fate and induce tissue morphogenesis directly. Theterm morphogen is principally used in developmental biology to describesa particular type of signaling molecule that can induce a cellularresponse in a concentration-dependent manner (Affolter M and Basler K,2007), while cytokines and chemokines (small cytokine inducingchemotaxis) are regulatory proteins essential for the development andfunctioning of both innate and adaptive immune response (Rossi D andZlotnik A, 2000; Vilcek J and Feldmann M, 2004). By definition growthfactors are capable of inducing cell growth, in addition to othercellular response such as migration and differentiation (Cross M andDexter T M, 1991). A growth factor can be either a morphogen or acytokine.

For example, key cytokines involved in tissue morphogenesis includevascular endothelial growth factors (VEGFs), platelet derived growthfactors (PDGFs), fibroblast growth factors (FGFs), insulin-like growthfactors (IGFs), bone morphogenetic proteins (BMPs), transforming growthfactors beta (TGF-βs), and neurotrophins (β-NGF, NT-3, BDNF). Manycytokines bind extracellular matrix components such as heparan sulfateproteoglycans (Lindahl U and Li J P, 2009), and reside there untilreleased by enzymatic processes or dissociation. These factors, whenreleased and sometimes also when matrix-bound (Makarenkova H P, et al.,2009), bind to cell-surface receptors and trigger signaling, principallythrough kinase activation. Thus, the extracellular matrix serves as areservoir of signaling molecules, both adhesion molecules and cytokines,that instruct cell decision processes. Angiogenesis, multicellularmorphogenesis, and stem cell differentiation are cellular processes thatare tightly controlled by the extracellular matrix and cytokines, andespecially by their cooperative signaling. Because tissue repair isdriven by these processes, the function of the extracellular matrixguides the design of biomaterials in tissue engineering and regenerativemedicine, with the overall goal of mimicking the following key features:the presentation of adhesion molecules and the release of cytokines.

Vaccinology

As mentioned above, cytokines play a fundamental role in tissuemorphogenesis. Cytokines also play a fundamental role in immunology, byregulating proliferation, maturation and migration of different immunecell types, thus driving the appropriate immune response to differenttypes of antigens. The cytokine TGF-β is a particularly importantcytokine in immunology.

Chemokines are small proteins that also play fundamental roles inimmunology. Among the chemokines, interferon-γ (IFN-γ) is a criticalimmunomodulatory chemokine for innate and adaptive immunity againstviral and bacterial antigens and for tumor control. IFN-γ is mainlyexpressed by natural killer (NK) and natural killer T-cells (NKT) aspart of the innate immune response, and by CD4 and CD8 T cells duringthe adaptive immune response. IFN-γ is the most important chemokine inregulating the balance between Th1 and Th2 cells: Th1 cells expressIFN-γ, which in turn causes Th1 differentiation and Th2 differentiationsuppression. The different cellular response to IFN-γ are activated byits binding to an heterodimeric receptor (IFNGR1 and IFNGR2) thatactivates JAK/STAT1 signaling pathway. The activation of thisintracellular signaling triggers the expression of multiple downstreamgenes, among them the chemokine interferon gamma-induced protein 10(CXCL10) and chemokine (C-X-X motif) ligand 11 (CXCL11). These twochemokines elicit their effect by binding CXCR3 receptor on the cellsurface and are considered potent chemoattractants formonocyte/macrophages, dendritic cells, NK and T-cells, respectively.

In vaccinology, antigens are peptide or protein domains or wholeproteins of pathogen or self-origin (Hubbell J A, et al., 2009). Vaccineantigens in infectious diseases are based on proteins found in thepathogens of interest, such as influenza antigens or tuberculosisantigens. The number of antigens targeted in infectious disease, both inprophylactic and therapeutic vaccines, are myriad. Vaccine antigens incancer are based on proteins found in the tumor cell type, such as theantigen survivin to be highly expressed in many tumor types or theantigen TRP-2 expressed in melanocytes and a target for cancervaccination in melanoma. The number of antigens targeted in cancer aremyriad.

A vaccine may be made that comprises a PlGF2 domain and an antigen, forinstance a vehicle or a matrix as described herein. The PlFG2 providesattachment to native tissue or ECM in the matrix. A vaccine compositionmay comprise adjuvants, danger signals, and/or chemokines, which may bepart of a matrix, a molecular fusion that comprises a PlGF2 domain, ormay be added in addition to the PlFG2.

PlGF

Peptides that mimic a domain from PlGF2 are described herein. Thecytokine PlGF exists in multiple isoforms. PlGF2 is an elongated isoformof PlGF-1, containing an insert of sequence RRRPKGRGKRRREKQRPTDCHL (SEQID NO:4) in the human, RRKTKGKRKRSRNSQTEEPHP (SEQ ID NO:5) in the mouse,and related sequences in other mammalian species. Herein the unexpectedsurprising discovery is reported that this peptide binds very stronglyto fibrinogen and fibrin, as well as the extracellular matrix proteinsfibronectin, vitronectin, osteopontin, tenascin C, and to lesser extentcollagen I. This domain is referred to as the PlGF2₁₂₃₋₁₄₄. The termPlGF2 domain is used to refer to this domain and to subdomains thatdemonstrate specific binding for extracellular matrix. The strongbinding between the PlGF2₁₂₃₋₁₄₄ and fibrinogen/fibrin can be used tobind proteins comprising PlGF2₁₂₃₋₁₄₄, including protein drugs andantigens, in fibrin matrices. The strong binding between PlGF2₁₂₃₋₁₄₄and fibrinogen/fibrin and/or extracellular matrix proteins can be usedto prolong the presence of proteins comprising PlGF2₁₂₃₋₁₄₄ that havebeen administered in fibrin matrices, that have been administered uponor within the site of an injury, or that have been administered upon orwithin a tissue site. The strong binding between the PlGF2 domain andextracellular matrix proteins can be used to prolong the retention ofproteins comprising the PlGF2 domain in tissues by virtue of binding toextracellular matrix endogenously present in the tissue or tissue lesionsite. The discovered affinity between PlGF2₁₂₃₋₁₄₄ and fibrinogen/fibrinand the affinity that exists between PlGF2₁₂₃₋₁₄₄ and extracellularmatrix molecules leads to a number of preferred embodiments.

The term PlGF2 or PlGF2 domain includes the peptides of SEQ ID NO:4 and5, and subsequences thereof, as well as the variations of thosesequences. SEQ ID NO:4 and 5 are embodiments of a PlGF2 domain. Furtherembodiments of a PlGF2 domain include conservative substitutions of thesequences and also truncated forms, with N-terminal and/or C-terminalresidues being truncated. Identifying truncations can be readilyaccomplished by the artisan reading the instant disclosure. The numberof consecutive residues that provide specific binding is between about 4and about 15 residues, with longer sequences also showing specificbinding. Accordingly, embodiments of PlGF2 include an isolatedpolypeptide comprising a sequence chosen from the group consisting ofSEQ ID NO:4 having from 0 to 5 conservative substitutions, SEQ ID NO:5having from 0 to 5 conservative substitutions, and subsequences thereof,said subsequences exhibiting specific binding to one or more of:fibrinogen, fibronectin, vitronectin, tenascin C, osteopontin, andfibrin. The subsequences include all subsequences of 4 to 15 residues inlength, e.g., all 4, 5, 6, and 7-residue subsequences, and all 7-12 andall 5-15 residue subsequences. The value of the dissociation constantfor the sequences is low, e.g., wherein the specific binding of thepolypeptide to fibrinogen has a dissociation constant (KD) of less thanabout 40 nM. Moreover, the substitution of L-amino acids in thediscovered sequence with D-amino acids can be frequently accomplished,as in Giordano.

Referring to FIG. 2, panel a, data for the testing subsequences of thePlGF2₁₂₃₋₁₅₂ showed that fragments of 7 residues retained specificbinding for extracellular matrix (ECM). The larger fragments, however,showed higher affinity. This data indicates that even shorter sequencescan reasonably be expected to show specific binding to appropriate ECM,including all subsequences of four or more residues. Further, manysequences in the biological arts are known to be effective when they arepart of even very large molecules, e.g., the RGD cell adhesion motif.Even though some molecules will fold in a way that confounds thespecific binding of such relatively small sequences, artisans are veryfamiliar with techniques for creating even very large molecules thatemploy such sequences in an effective manner. On the other hand, thereare a certain number of natural biomolecules that may have one or moresuch sequences occurring as a result of random chance, considering thatthere are many natural biomolecules and only about 20 natural aminoacids. Such sequences should not be assumed to be active for specificbinding because such biomolecules have been evolutionarily tuned toaccomplish specific functions. Binding to ECM is a very importantnaturally-occurring, specific function that should not be attributed toparticular biomolecules without suitable biological evidence in suchinstances.

Most adhesion binding motifs can undergo some conservative substitutionsand retain functionality. Although not all such substitutions will beeffective, such changes are often effective. There are a variety ofconservative changes that can generally be made to an amino acidsequence without altering activity. These changes are termedconservative substitutions or mutations; that is, an amino acidbelonging to a grouping of amino acids having a particular size orcharacteristic can be substituted for another amino acid. Substitutesfor an amino acid sequence may be selected from other members of theclass to which the amino acid belongs. For example, the nonpolar(hydrophobic) amino acids include alanine, leucine, isoleucine, valine,proline, phenylalanine, tryptophan, methionine, and tyrosine. The polarneutral amino acids include glycine, serine, threonine, cysteine,tyrosine, asparagine and glutamine. The positively charged (basic) aminoacids include arginine, lysine and histidine. The negatively charged(acidic) amino acids include aspartic acid and glutamic acid. Suchalterations are not expected to substantially affect apparent molecularweight as determined by polyacrylamide gel electrophoresis orisoelectric point. Conservative substitutions also include substitutingoptical isomers of the sequences for other optical isomers, specificallyD amino acids for L amino acids for one or more residues of a sequence.Moreover, all of the amino acids in a sequence may undergo a D to Lisomer substitution. Exemplary conservative substitutions include, butare not limited to, Lys for Arg and vice versa to maintain a positivecharge; Glu for Asp and vice versa to maintain a negative charge; Serfor Thr so that a free —OH is maintained; and Gln for Asn to maintain afree NH₂. Moreover, point mutations, deletions, and insertions of thepolypeptide sequences or corresponding nucleic acid sequences may insome cases be made without a loss of function of the polypeptide ornucleic acid fragment. Substitutions may include, e.g., 1, 2, 3, or moreresidues. The amino acid residues described herein employ either thesingle letter amino acid designator or the three-letter abbreviation.Abbreviations used herein are in keeping with the standard polypeptidenomenclature, J. Biol. Chem., (1969), 243, 3552-3559. All amino acidresidue sequences are represented herein by formulae with left and rightorientation in the conventional direction of amino-terminus tocarboxy-terminus. Accordingly, conservative substitutions of thepeptides set forth herein are contemplated and may be described in termsof quantity, e.g., 1 to 5, or percent, e.g., 0% to 33%. Artisans willimmediately appreciate that all values and ranges within the expresslystated limits are contemplated, e.g., about 5%, 7 about %, or about 15%.In the case of 1 substitution in 7 residues, the substitution is 14.2%,which is about 15%. In the case of 2 substitutions in 22, the percentageis 9.1, which is about 10%.

Certain embodiments provide various polypeptide sequences and/orpurified or isolated polypeptides. A polypeptide is a term that refersto a chain of amino acid residues, regardless of post-translationalmodification (e.g., phosphorylation or glycosylation) and/orcomplexation with additional polypeptides, synthesis into multisubunitcomplexes, with nucleic acids and/or carbohydrates, or other molecules.Proteoglycans therefore also are referred to herein as polypeptides. Asused herein, a “functional polypeptide” is a polypeptide that is capableof promoting the indicated function. Polypeptides can be produced by anumber of methods, many of which are well known in the art. For example,polypeptides can be obtained by extraction (e.g., from isolated cells),by expression of a recombinant nucleic acid encoding the polypeptide, orby chemical synthesis. Polypeptides can be produced by, for example,recombinant technology, and expression vectors encoding the polypeptideintroduced into host cells (e.g., by transformation or transfection) forexpression of the encoded polypeptide.

In some cases a determination of the percent identity of a peptide to asequence set forth herein may be required. In such cases, the percentidentity is measured in terms of the number of residues of the peptide,or a portion of the peptide. A polypeptide of, e.g., 90% identity, mayalso be a portion of a larger peptide

The term purified as used herein with reference to a polypeptide refersto a polypeptide that has been chemically synthesized and is thussubstantially uncontaminated by other polypeptides, or has beenseparated or purified from other most cellular components by which it isnaturally accompanied (e.g., other cellular proteins, polynucleotides,or cellular components). An example of a purified polypeptide is onethat is at least 70%, by dry weight, free from the proteins andnaturally occurring organic molecules with which it naturallyassociates. A preparation of the a purified polypeptide therefore canbe, for example, at least 80%, at least 90%, or at least 99%, by dryweight, the polypeptide. Polypeptides also can be engineered to containa tag sequence (e.g., a polyhistidine tag, a myc tag, or a FLAG® tag)that facilitates the polypeptide to be purified or marked (e.g.,captured onto an affinity matrix, visualized under a microscope). Thus apurified composition that comprises a polypeptide refers to a purifiedpolypeptide unless otherwise indicated. The term isolated indicates thatthe polypeptides or nucleic acids of the invention are not in theirnatural environment. Isolated products of the invention may thus becontained in a culture supernatant, partially enriched, produced fromheterologous sources, cloned in a vector or formulated with a vehicle,etc.

Polypeptides may include a chemical modification; a term that, in thiscontext, refers to a change in the naturally-occurring chemicalstructure of amino acids. Such modifications may be made to a side chainor a terminus, e.g., changing the amino-terminus or carboxyl terminus.In some embodiments, the modifications are useful for creating chemicalgroups that may conveniently be used to link the polypeptides to othermaterials, or to attach a therapeutic agent.

Specific binding, as that term is commonly used in the biological arts,refers to a molecule that binds to a target with a relatively highaffinity compared to non-target tissues, and generally involves aplurality of non-covalent interactions, such as electrostaticinteractions, van der Waals interactions, hydrogen bonding, and thelike. Specific binding interactions characterize antibody-antigenbinding, enzyme-substrate binding, and specifically bindingprotein-receptor interactions; while such molecules may bind tissuesbesides their targets from time to time, such binding is said to lackspecificity and is not specific binding.

Discussion

Example 1 (see FIG. 1) describes results establishing that the domainPlGF2₁₂₃₋₁₄₄ was discovered within PlGF2 that strongly and promiscuouslybinds ECM proteins. This domain is only a part of PlGF2 and, as such,does not exist in nature. PlGF2 strongly bound all ECM proteins tested(FIG. 1, gray bars). Alignment of the protein sequences of the splicevariants PlGF2 and PlGF-1 (which does not bind) illustrates how PlGF2contains an additional 21 amino-acid insert (PlGF2₁₂₃₋₁₄₄, in gray)located near the C-terminus. Binding was also shown to be effective whenthe PlGF2 domain was fused to a protein, GST (GST-PlGF2₁₂₃₋₁₄₄). FromExample 1, it was concluded that PlGF2₁₂₃₋₁₄₄ comprises a ECM proteinbinding domain. The binding of various PLGF2 fragments to various ECMproteins, heparan sulfate, and neuropilin-1 was tested, with the resultsdepicted in FIG. 2. Example 2 details the experiments as well asdescribing examples of making truncations and/or substitutions into thesequence.

A variety of cytokines were made as fusion proteins with the PlGF2domain (Example 3; FIG. 3). FIG. 4 (see Example 4) sets forth resultsfor the binding of such fusion proteins with ECM. The dissociationcontstants for the specific binding were measured and it was determinedthat the affinity of PlGF2 for a wide variety of ECM proteins wasconferred upon the fusion molecules. These included Vascular endothelialgrowth factor (VEGF), Platelet-derived growth factor (PDGF), and Bonemorphogenetic protein (BMP). Example 5 details the further manufactureof cytokine-PlGF2 domain molecular fustions, including fusions withInsulin Growth Factor-I (IGF-I), Transforming Growth Factor beta 1(TGF-β1), TGF-beta 2 (TGF-β2), Brain-derived neurotrophic factor (BDNF),and a neurotrophin (NT), NT-3. These biological factors were observed(Example 6, FIG. 5) to maintain their biological activity in when fusedto the PlGF2 domain. In fact the VEGF fusion molecule had increasedactivity.

There is a major problem that has arisen in translating VEGF-A toclinical use. Indeed, while VEGF-A activation of VEGF-receptor 2(VEGF-R2) is potentially a powerful approach to promote angiogenesis,actual administration of VEGF-A has been shown to rapidly inducevascular permeability, which leads to systemic hypotension and edema;this phenomenon has been the dose-limiting toxic response in peripheraland cardio-vascular applications (Simons M and Ware J A, 2003) andpresents serious issues in regenerative medicine. It was theorized thatcombining VEGF and a PlGF2 domain would not affect the potency of theVEGF but would cause it to be released more slowly so that vascularpermeability would be lessened and the combination would be moreeffective than the VEGF by itself. Similarly, the fusion of variouscytokines to the PlGF2 domain is similarly theorized to be effective.These theories were supported in a series of experiments. Example 7(FIG. 6) details how various ECM super-affinity cytokine variants werecreated that bind to, and are retained by, ECM molecules in vivo.Example 8 (FIG. 7) used clinically important models to test the healingpower of molecular fusions of PDGF-BB and VEGF-A with a PlGF2 domain.Wounds treated with the engineered molecular fusions of PDGF-BB andVEGF-A led to significantly faster wound closure, and improved healingwas corroborated by observing better granulation tissue and biomarkers(CD31 and desmin) that showed improved angiogenesis.

Further, the molecular fusion of VEGF and a PlGF2 domain was observed tocause much less vascular permeability despite causing these improvedresults. Example 9 (FIG. 8) details the results. In brief, the fusionmolecule appeared to decouple angiogenesis from hyper-permeability.

In light of these various results showing that the PlGF2 domains couldcreate a desired specific binding in a fusion molecule withoutdisrupting cytokine functions, further tests were conducted todemonstrate the general applicability of such combinations. Example 10(FIG. 9) details the treatment of bone defects with molecular fusions ofcytokines with a PlGF2 domain. In these experiments, a matrix was usedto retain and controllably deliver the molecular fusions. In brief, thefusion molecules were much more effective than the cytokines bythemselves, and much lower doses were effective (nanograms of the fusionmolecule compared to micrograms of the unaltered cytokines). Theseresults demonstrate the effectiveness of a matrix that specificallybinds the molecular fusions as well as their effectiveness in a bonehealing treatment.

A variety of detailed Examples are further provided that describe how todesign and make various molecular fusions. Example 11 details how celladhesion motifs may be fused to a PlGF2 domain. A fibronectin domain isused as an example. Matrices for delivery drugs and/or promoting cellinvasion or healing can be exposed to such molecular fusions to and bemodified to carry a drug or other bioactive agent such as a celladhesion motif. Various matrices are known, including syntheticmatrices, fibrin matrices, and natural or synthetic matrices, includingthose that are covalently crosslinked and those that are not covalentlycrosslinked. Example 12 details a molecular fusion of a drug for releasefrom a matrix, with Parathyroid Hormone Fragment 1-34 used as anexample. Example 13 details a molecular fusion of a PlGF2 domain and aprotease inhibitor. The context is a fibrin matrix with aprotinin as anexample. Example 14 details a molecular fusion of the chemokines CXCL10,CXCL11, IFN-γ, and CCL21 with PlGF2.

Vaccines may also be made using a PlGF2 domain. Example 15 details themolecular fusion of an immunogenic antigen with a PlGF2 domain. Thismolecule may be administered in the context of a pharmaceuticallyacceptable compound and in combination with other features for vaccines,e.g., as detailed elsewhere herein. For instance, Example 16 providesdetails for engineering the Toll-like receptor agonist fused with aPlGF2 domain.

Drug-delivery and controlled release is generally exemplified by thedetails of Example 17, which describes a molecular fusion of a bioactiveagent with a PlGF2 domain. For instance, the an extracellularmatrix-binding FGF18 is provided by a fusion protein between FGF18 and aPlGF2 domain. Various alternatives for this fusion are presented.

Molecular Fusion

A preferred embodiment is a molecular fusion between a PlGF2 domain anda therapeutic agent. Embodiments include a PlGF2 domain in a molecularfusion with, e.g., a therapeutic agent, marker, cell adhesion molecule,antigen, protein, protein drug, or cytokine. A molecular fusion may beformed between a first PlGF2 peptide and a second peptide. Instead ofsecond peptide a chemical moiety may be used, e.g., a marker,fluorescent marker. The fusion comprises the peptides conjugateddirectly or indirectly to each other. The peptides may be directlyconjugated to each other or indirectly through a linker. The linker maybe a peptide, a polymer, an aptamer, a nucleic acid, or a particle. Theparticle may be, e.g., a microparticle, a nanoparticle, a polymersome, aliposome, or a micelle. The polymer may be, e.g., natural, synthetic,linear, or branched. A fusion protein that comprises the first peptideand the second peptide is an example of a molecular fusion of thepeptides, with the fusion protein comprising the peptides directlyjoined to each other or with intervening linker sequences and/or furthersequences at one or both ends. The conjugation to the linker may bethrough covalent bonds. Methods include preparing a molecular fusion ora composition comprising the molecular fusion, including such acomposition in a pharmaceutically acceptable form.

Embodiments include a molecular fusion of a polypeptide that comprises aPlGF2 domain and a transglutaminase substrate (TG). An embodiment of aTG substrate is a peptide that comprises residues 1-8 of alpha 2-plasmininhibitor (NQEQVSPL) (SEQ ID NO:50). Embodiments include such apolypeptide being a recombinant fusion polypeptide. The molecular fusionmay be further comprising a cell adhesion moiety having a specificbinding affinity for a cell adhesion molecule. Various cell adhesionmoieties are known, for instance, wherein the cell adhesion moietycomprises a ligand for a glycoprotein or a cell surface receptor. Or thecell adhesion moiety may comprise a ligand with specific binding to thecell adhesion molecule and the cell adhesion molecule is a cell surfacereceptor chosen from the group consisting of an integrin, and acadherin.

The term molecular fusion, or the term conjugated, refers to direct orindirect association by chemical bonds, including covalent,electrostatic ionic, or charge-charge. The conjugation creates a unitthat is sustained by chemical bonding. Direct conjugation refers tochemical bonding to the agent, with or without intermediate linkers orchemical groups. Indirect conjugation refers to chemical linkage to acarrier. The carrier may largely encapsulate the agent, e.g., apolymersome, a liposome or micelle or some types of nanoparticles, orhave the agent on its surface, e.g., a metallic nanoparticle or bead, orboth, e.g., a particle that includes some of the agent in its interioras well as on its exterior. The carrier may also encapsulate an antigenfor immunotolerance. For instance a polymersome, liposome, or a particlemay be made that encapsulates the antigen. The term encapsulate means tocover entirely, effectively without any portion being exposed, forinstance, a polymersome may be made that encapsulates an antigen or anagent.

Conjugation may be accomplished by covalent bonding of the peptide toanother molecule, with or without use of a linker. The formation of suchconjugates is within the skill of artisans and various techniques areknown for accomplishing the conjugation, with the choice of theparticular technique being guided by the materials to be conjugated. Theaddition of amino acids to the polypeptide (C- or N-terminal) whichcontain ionizable side chains, i.e. aspartic acid, glutamic acid,lysine, arginine, cysteine, histidine, or tyrosine, and are notcontained in the active portion of the polypeptide sequence, serve intheir unprotonated state as a potent nucleophile to engage in variousbioconjugation reactions with reactive groups attached to polymers, i.e.homo- or hetero-bi-functional PEG (e.g., Lutolf and Hubbell,Biomacromolecules 2003; 4:713-22, Hermanson, Bioconjugate Techniques,London. Academic Press Ltd; 1996). In some embodiments, a solublepolymer linker is used, and may be adminsited to a patient in apharmaceutically acceptable form. Or a drug may be encapsulated inpolymerosomes or vesicles or covalently attached to the peptide ligand.

The molecular fusion may comprise a particle. The PlGF2 domain may beattached to the particle. An antigen, agent, or other substance may bein or on the particle. Examples of nanoparticles, micelles, and otherparticles are found at, e.g., US 2008/0031899, US 2010/0055189, US2010/0003338, which applications are hereby incorporated by referenceherein for all purposes, including combining the same with a ligand asset forth herein; in the case of conflict, however, the instantspecification controls.

Nanoparticles may be prepared as collections of particles having anaverage diameter of between about 10 nm and about 200 nm, including allranges and values between the explicitly articulated bounds, e.g., fromabout 20 to about 200, and from about 20 to about 40, to about 70, or toabout 100 nm, depending on the polydispersity which is yielded by thepreparative method. Various nanoparticle systems can be utilized, suchas those formed from copolymers of poly(ethylene glycol) and poly(lacticacid), those formed from copolymers of poly(ethylene oxide) andpoly(beta-amino ester), and those formed from proteins such as serumalbumin. Other nanoparticle systems are known to those skilled in thesearts. See also Devalapally et al., Cancer Chemother Pharmacol.,07-25-06; Langer et al., International Journal of Pharmaceutics,257:169-180 (2003); and Tobío et al., Pharmaceutical Research,15(2):270-275 (1998).

Larger particles of more than about 200 nm average diameterincorporating the heparin binding ligands may also be prepared, withthese particles being termed microparticles herein since they begin toapproach the micron scale and fall approximately within the limit ofoptical resolution. For instance, certain techniques for makingmicroparticles are set forth in U.S. Pat. Nos. 5,227,165, 6,022,564,6,090,925, and 6,224,794.

Functionalization of nanoparticles to employ targeting capabilityrequires association of the targeting polypeptide with the particle,e.g., by covalent binding using a bioconjugation technique, with choiceof a particular technique being guided by the particle or nanoparticle,or other construct, that the polypeptide is to be joined to. In general,many bioconjugation techniques for attaching peptides to other materialsare well known and the most suitable technique may be chosen for aparticular material. For instance, additional amino acids may beattached to the polypeptide sequences, such as a cysteine in the case ofattaching the polypeptide to thiol-reactive molecules.

The molecular fusion may comprise a polymer. The polymer may be branchedor linear. The molecular fusion may comprise a dendrimer. In general,soluble hydrophilic biocompatbile polymers may be used so that theconjugate is soluble and is bioavailable after introduction into thepatient. Examples of soluble polymers are polyvinyl alcohols,polyethylyene imines, and polyethylene glycols (a term includingpolyethylene oxides) having a molecular weight of at least 100, 400, orbetween 100 and 400,000 (with all ranges and values between theseexplicit values being contemplated). Solubility in this context refersto a solubility in water or physiological saline of at least 1 gram perliter. Domains of biodegradable polymers may also be used, e.g.,polylactic acid, polyglycolic acid, copolymers of polylactic andpolyglycolic acid, polycaprolactones, polyhydroxy butyric acid,polyorthoesters, polyacetals, polydihydropyrans, and polycyanoacylates.

Embodiments include a polymer comprising a polypeptide comprising asynthetic PlGF2 peptide. For example embodiments include the polymerslisted above as well as a polysaccharide, polyethylene glycol,polyalkylene oxide, collagen, or gelatin. The polymer may furthercomprises a transglutaminase substrate (TG), a cytokine, and the like.

In some embodiments, a polypeptide-polymer association, e.g., amolecular fusion, is prepared and introduced into the body as a purifiedcomposition in a pharmaceutically acceptable condition, or with apharmaceutical excipient. The site of introduction may be, e.g.,systemic, or at a tissue or a transplantation site.

Embodiments include a molecular fusion between a PlGF2 domain and aprotein drug, such as a recombinant fusion protein comprising a PlGF2domain and the protein drug, a chemical conjugate comprising a PlGF2domain and the protein drug, or an indirect chemical conjugatecomprising the PlGF2 domain and the protein drug mediated through jointfusion to a polymer or a polymeric micelle or nanoparticle. Molecularfusions between the PlGF2 domain and the protein drug may serve toanchor the protein drug to tissues when administered in tissue sites, byaffinity with fibrinogen/fibrin in injured tissue sites or by affinityto ECM proteins in tissue sites. As such, a preferred embodiment is amolecular fusion of a PlGF2 domain and a protein drug in apharmaceutically acceptable carrier. Alternatively, molecular fusionsbetween the PlGF2 domain and a protein drug may serve to anchor theprotein drug within a fibrin matrix. Fibrin is a commonly usedbiomaterial matrix, used in sealing and adhering tissues, inregenerative medicine applications, and in drug delivery applications.Anchoring protein drugs within fibrin matrices may providepharmacological benefits in these and other applications. Peptide andprotein antigens may also be linked anchored within fibrin matrices byforming a molecular fusion between the antigen and a PlGF2 domain. Assuch, a preferred embodiment is a molecular fusion of a PlGF2 domain anda protein drug or antigen in a pharmaceutically acceptable formulationof fibrinogen/fibrin. Fibrinogen/fibrin may also be prepared fromautologous sources, and as such a preferred embodiment is a molecularfusion of a PlGF2 domain and a protein drug or antigen in apharmaceutically acceptable carrier for application in autologousfibrin.

Vehicle

In many cases, a therapeutic agent, e.g., protein drugs such ascytokines, hormones, or cell-adhesion proteins might be delivereddirectly at the body site that needs to be treated without the use ofany matrix. However, due to interstitial flow and drainage, cytokines orother soluble agents can be rapidly cleared from the site of injection,depending of their binding affinity for the ECM. Since cytokinesmodified with a PlGF2 sequence, e.g., PlGF2₁₂₃₋₁₄₄ sequence, showimproved binding to several extracellular matrix proteins includingfibronectin, tenascin C, vitronectin, osteopontin, and collagen I, theycan be better retained at the site of injection, resulting in animproved treatment.

A PlGF2 peptide may be used as a vehicle for delivery of a therapeuticagent. The vehicle is soluble or a colloid in a physiological solutionwith all components of the vehicle preferably being less than about 500μm in maximum dimension when released in the body. Embodiments of thePlGF2 vehicle include a molecular fusion of a biological agent and apeptide comprising a sequence chosen from the group consisting of SEQ IDNO:4 having from 0 to 5 conservative substitutions, SEQ ID NO:5 havingfrom 0 to 5 conservative substitutions, and subsequences thereof, saidnucleic acid exhibiting specific binding to one or more of fibrinogen,fibronectin, vitronectin, tenascin C, osteopontin, and fibrin. Thebiological agent may be chosen from the group consisting of a protein, aprotein drug, a marker, an immunoagent, a chemokine, a cytokine, and acell adhesion peptide.

In use, a PlGF2 peptide, by itself or as part of a molecular fusion,exhibits binding specificity for various ECM molecules, includingfibrinogen, fibronectin, vitronectin, tenascin C, osteopontin, andfibrin. In this context, fibrinogen and fibrin may be viewed astemporary ECM. Placement of the PlGF2 vehicle into a tissue results inlocalized immobilization of the vehicle at or near the site ofplacement, and is not systemic. The agent(s) carried by the vehicle willbe released over time or be consumed where they are immobilized by cellsthat are interacting with the tissue. The patient's own tissue can thusserve as a biomatrix for delivery of factors. Many uses for biomatricesare known, including extended release of drugs.

Matrices

Embodiments include a biomaterial incorporating a PlGF2 domain in amatrix. The term matrix refers to a synthetic three-dimensionalstructure, including a block, sheet, or film; it is a term used incontrast to a soluble or fluid material. The term synthetic means notnative to the patient, and being exogenous relative to the patient. Thematrices, when used internally as scaffolds, have to withstandmechanical loads, contain suitable degradation kinetics, and presentbioactive molecules. Scaffolds function as a fusion of cell carrier anddrug delivery device for the purpose of tissue engineering. To mimic thenatural microenvironment for cells in order to induce tissue repair andregeneration, synthetic materials can be modified with ECM fragments.ECM fragments described in this report may be designed to form amolecular fusion with a transglutaminase (TG) substrate at the Nterminus, consisting of residues 1-8 of the protein alpha2 plasmininhibitor (α2PI1-8, NQEQVSPL (SEQ ID NO:50)). Factor XIIIa can thereforebe used as a transglutaminase to catalyze the reaction between theglutamines of this sequence (NQEQVSPL) and the lysines of differentbiomaterials. The coagulation enzyme, factor XIIIa, will covalently bindthe free amine group of the lysines (Lys) to the gamma-carboxamid groupof glutamine (Gln), resulting in bonds that exhibit high resistance toproteolytic degradation. For example, natural fibrin hydrogels arecross-linked by this mechanism and a TG-PlGF2 domain can therefore becross-linked inside the gel (Schense and Hubbell, 1999).

With regard to preferred embodiments to anchor biomolecules to a fibrinmatrix, the biomolecule may be a recombinant protein drug for localdelivery in tissue repair, including cytokines. Thus, a preferredembodiment for tissue repair is a pharmaceutical formulation of a tissuerepair matrix comprising fibrinogen or fibrin and a molecular fusionbetween the PlGF2₁₂₃₋₁₄₄ and a recombinant cytokine, including membersof the epidermal growth factor (EGF), VEGF, PDGF, FGF, IGF, BMP, TGF-βand neurotrophin families and superfamiles. The fibrin matrix may alsoserve as a controlled release matrix for sustained delivery of molecularfusions of protein drugs with a PLGF2 domain or PlGF2₁₂₃₋₁₄₄ and proteindrugs.

A preferred embodiment is a fusion protein comprising the PLGF2 domainorPlGF2₁₂₃₋₁₄₄ and the cytokine VEGF-A, the denotation VEGF-A referring toany of the isoforms of VEGF-A.

The PlGF2₁₂₃₋₁₄₄ may be used to engineer fibrin matrixes for localimmunomodulation and immunopotentiation, including vaccination.Preferred embodiments are molecular fusions comprising the PlGF2₁₂₃₋₁₄₄and a chemokine, chemokines of interest including INF-β, CXCL10, CXCL11,and CCL21 or cytokines including TGF-β1, TGF-β2 or TGF-β3. Preferredembodiments are an immunomodulation or immunopotentiation matrixcomprising fibrinogen or fibrin and a molecular fusion between the PLGF2domain or PlGF2₁₂₃₋₁₄₄ and a recombinant chemokine, chemokines ofinterest including INF-β, CXCL10, CXCL11, and CCL21 or cytokinesincluding TGF-β1, TGF-β2 or TGF-β3. PlGF2₁₂₃₋₁₄₄ may be used toincorporate immunological danger signal extracellular matrix proteins infibrin. PlGF2₁₂₃₋₁₄₄ may be used to incorporate danger signalextracellular matrix proteins in fibrin, including the fibrinogen-likeglobular domain of tenascin C, an immunological danger signal. Apreferred embodiment is a molecular fusion of a PLGF2 domain and thefibrinogen-like globular domain of tenascin C.

An important application in immunopotentiation is vaccination. Apreferred embodiment is a vaccine matrix comprising fibrinogen or fibrinand a molecular fusion of the PLGF2 domain and a peptide or proteinantigen. A preferred embodiment is a molecular fusion between a PLGF2domain and a peptide or protein antigen. A further preferred embodimentis a vaccine matrix comprising fibrinogen or fibrin, a molecular fusionbetween PLGF2 domain and a chemokine, a molecular fusion of PLGF2 andthe fibrinogen-like globular domain of tenascin C, and a molecularfusion between a PLGF2 domain and a peptide or protein antigen.

Fibrin matrices also provide an adhesive environment within which cellsmigrate, infiltrate and invade. It is useful to be able to modulate thisadhesion environment, and this may be done by making molecular fusionsof adhesion peptides or adhesion protein domains, such as FN III9-10, ormany corresponding domains found in fibronectin, vitronectin, laminin,and tenascin C, for example. Preferred embodiments are molecular fusionsof PlGF2₁₂₃₋₁₄₄ and adhesion domains, the adhesion domains including theintegrin-binding peptides derived from fibronectin, adhesion domainscomprising the amino acid sequences RGD, RGDS, RGDSP (SEQ ID NO: 52),KLDAPT (SEQ ID NO: 51), IDGIHEL (SEQ ID NO: 49), IDAPS (SEQ ID NO: 48),LDV, and REDV, and the fibronectin adhesion domains FN III10, FNIII9-10, as well as the 1^(st)-5^(th) FN type III repeats of tenascin,and the 3^(th) FN type III repeat of tenascin C.

In addition to adhesion domains, it is useful to anchor cytokine- andchemokine-binding domains within fibrin matrices. This can beaccomplished with molecular fusions of a PLGF2 domain and cytokine- andchemokine-binding domains, for example from fibronectin, tenascin C,vitronectin, laminin and other matrix molecules. Preferred embodimentsare a molecular fusion of a PLGF2 domain and FN III12-14, a molecularfusion of a PLGF2 domain and TNC III1-5, a molecular fusion of a PLGF2domain and TNCIII 3-5, and a molecular fusion of a PLGF2 domain andTNCIII5.

It is also of value to anchor protease inhibitors within fibrin, todelay degradation of fibrin after implantation within or on the surfaceof the body. This can be accomplished with molecular fusions of a PLGF2domain and a protease inhibitor, such as aprotinin. A preferredembodiment is a molecular fusion of PLGF2 and aprotinin. A preferredembodiment is a fibrin formulation comprising a molecular fusion of aPLGF2 domain and aprotinin.

Administration

Pharmaceutically acceptable carriers or excipients may be used todeliver embodiments as described herein. Excipient refers to an inertsubstance used as a diluent or vehicle for a therapeutic agent.Pharmaceutically acceptable carriers are used, in general, with acompound so as to make the compound useful for a therapy or as aproduct. In general, for any substance, a carrier is a material that iscombined with the substance for delivery to an animal. Conventionalpharmaceutical carriers, aqueous, powder or oily bases, thickeners andthe like may be necessary or desirable. In some cases the carrier isessential for delivery, e.g., to solubilize an insoluble compound forliquid delivery; a buffer for control of the pH of the substance topreserve its activity; or a diluent to prevent loss of the substance inthe storage vessel. In other cases, however, the carrier is forconvenience, e.g., a liquid for more convenient administration.Pharmaceutically acceptable salts of the compounds described herein maybe synthesized according to methods known to those skilled in the arts.Pharmaceutically acceptable substances or compositions are highlypurified to be free of contaminants, are sterile, and are biocompatible.They further may include a carrier, salt, or excipient suited toadministration to a patient. In the case of water as the carrier, thewater is highly purified and processed to be free of contaminants, e.g.,endotoxins.

The compounds described herein may be administered in admixture withsuitable pharmaceutical diluents, excipients, extenders, or carriers(termed herein as a pharmaceutically acceptable carrier, or a carrier)suitably selected with respect to the intended form of administrationand as consistent with conventional pharmaceutical practices. Thus thedeliverable compound may be made in a form suitable for oral, rectal,topical, intravenous injection, intra-articular injection, parenteraladministration, intra-nasal, or tracheal administration. Carriersinclude solids or liquids, and the type of carrier is chosen based onthe type of administration being used. Suitable binders, lubricants,disintegrating agents, coloring agents, flavoring agents, flow-inducingagents, and melting agents may be included as carriers, e.g., for pills.For instance, an active component can be combined with an oral,non-toxic, pharmaceutically acceptable, inert carrier such as lactose,gelatin, agar, starch, sucrose, glucose, methyl cellulose, magnesiumstearate, dicalcium phosphate, calcium sulfate, mannitol, sorbitol andthe like. The compounds can be administered orally in solid dosageforms, such as capsules, tablets, and powders, or in liquid dosageforms, such as elixirs, syrups, and suspensions. The active compoundscan also be administered parentally, in sterile liquid dosage forms.Buffers for achieving a physiological pH or osmolarity may also be used.

EXAMPLES Example 1

A short amino-acid sequence within PlGF2 (PlGF2₁₂₃₋₁₄₄) strongly bindsECM proteins.

A domain was discovered within PlGF2 (PlGF2₁₂₃₋₁₄₄) strongly andpromiscuously binds ECM proteins. GF binding to ECM proteins wasmeasured by ELISA. A signal over 0.1 (gray box) was considered asrepresentative of a specific binding. PlGF2 strongly bound all ECMproteins tested (gray bars). Alignment of the protein sequences of thesplice variants PlGF2 and PlGF-1 (which does not bind) illustrates howPlGF2 contains an additional 21 amino-acid insert (PlGF2₁₂₃₋₁₄₄, ingray) located near the C-terminus. Binding of PlGF2₁₂₃₋₁₄₄ to ECMproteins when fused to a non-binding model protein, GlutathioneS-transferase (GST) (GST-PlGF2₁₂₃₋₁₄₄) was tested. A scrambled versionof PlGF2₁₂₃₋₁₄₄ (GST-PlGF2_(scr)) does not bind ECM proteins. FIG. 1sets forth experimental data for the same.

Example 2

Optimization of the ECM binding domain of PlGF2

From Example 1, it was concluded that PlGF2₁₂₃₋₁₄₄ comprises an ECMprotein binding domain. The binding of various GST-PLGF2 fragments tovarious ECM proteins, heparan sulfate, and neuropilin-1 was tested, withthe results depicted in FIG. 2

This domain may be further engineered through removal of sequences thatare not critical for binding ECM proteins through experimentation. Suchexperimentation can be carried out as follows. The ELISA assay describedin Example 1 is useful as a read-out in such experimental optimization.Fusion proteins are made from a protein such as GST that comprise thefull-length domain PlGF2₁₂₃₋₁₄₄ at one terminus, for example theC-terminus, and binding to surface-bound fibrinogen is measured by anELISA assay using an antibody that detects the protein GST to establisha baseline of binding induced by the full-length PlGF2₁₂₃₋₁₄₄ domain.Further fusion proteins are made, comprising the PlGF2₁₂₃₋₁₄₄ domainthat has been trimmed by one or more amino acid residues from theC-terminal end of the full-length PlGF2₁₂₃₋₁₄₄ or from the N-terminalend of the full-length PlGF2₁₂₃₋₁₄₄. Thus, two families of fusionproteins are formed, one with shortening at the N-terminal end ofPlGF2₁₂₃₋₁₄₄ and one with shortening at the C-terminal end ofPlGF2₁₂₃₋₁₄₄. Measurement of binding to the surface-bound ECM allowsdetermination of the structure-function relationship betweenPlGF2₁₂₃₋₁₄₄ length (from either end) and affinity for ECM proteins.Conservative substitutions of amino acids within this domain may besimilarly characterized.

Example 3

Design and production of ECM-binding cytokines containing PlGF2₁₂₃₋₁₄₄.

Sequences encoding for molecular fusions, in particular fusion proteins,of human cytokines (VEGF-A165, PDGF-BB and BMP-2) and the PlGF2₁₂₃₋₁₄₄domain were amplified by the polymerase chain reaction and wereassembled into the mammalian expression vector pXLG, in order to obtaincytokine-PlGF2₁₂₃₋₁₄₄ (SEQ ID NO:s 7, 9, 11, 12, and 13). In order toavoid a protein-misfolding issue due to the inclusion of PlGF2₁₂₃₋₁₄₄,the single cysteine within the PlGF2₁₂₃₋₁₄₄ (Cys¹⁴²), can be removed orsubstituted with another amino acid such as a serine (PlGF2_(123-144*).)The fusion proteins were expressed in HEK cells and purified byimmobilized metal affinity chromatography using a binding buffercontaining 500 mM NaCl, 20 mM sodium phosphate and 10 mM imidazole, pH7.4. The protein was further dialyzed against Tris buffer (20 mM Tris,150 mM NaCl, pH 7.4). Design examples of cytokines containingPlGF2_(123-144*) are shown in FIG. 3.

SEQ ID NO: 6: human VEGF-A121APMAEGGGQNHHEVVKFMDVYQRSYCHPIETLVDIFQEYPDEIEYIFKPSCVPLMRCGGCCNDEGLECVPTEESNITMQIMRIKPHQGQHIGEMSFLQHNKCECRPKKDRARQECDKP RRSEQ ID NO: 7: human VEGF-A121-PlGF2₁₂₃₋₁₄₄APMAEGGGQNHHEVVKFMDVYQRSYCHPIETLVDIFQEYPDEIEYIFKPSCVPLMRCGGCCNDEGLECVPTEESNITMQIMRIKPHQGQHIGEMSFLQHNKCECRPKKDRARQERRRPKGRGKRRREKQRPTDCHLCDKPRRThe denotation VEGF-A-PlGF2₁₂₃₋₁₄₄ is used to refer to SEQ ID NO: 7 andto other fusion designs of VEGF-A comprising the PlGF2₁₂₃₋₁₄₄ domain.

SEQ ID NO: 8: human PDGF-BBSLGSLTIAEPAMIAECKTRTEVFEISRRLIDRTNANFLVWPPCVEVQRCSGCCNNRNVQCRPTQVQLRPVQVRKIEIVRKKPIFKKATVTLEDHLACKCETVAAARPVTSEQ ID NO: 9: human PDGF-BB-PlGF2₁₂₃₋₁₄₄SLGSLTIAEPAMIAECKTRTEVFEISRRLIDRTNANFLVWPPCVEVQRCSGCCNNRNVQCRPTQVQLRPVQVRKIEIVRKKPIFKKATVTLEDHLACKCETVAAARPVTRRRPKGRGKRRR EKQRPTDCHLSEQ ID NO: 10: human BMP-2QAKHKQRKRLKSSCKRHPLYVDFSDVGWNDWIVAPPGYHAFYCHGECPFPLADHLNSTNHAIVQTLVNSVNSKIPKACCVPTELSAISMLYLDENEKVVLKNYQDMVVEGCGCRSEQ ID NO: 11: human BMP-2-PlGF2₁₂₃₋₁₄₄QAKHKQRKRLKSSCKRHPLYVDFSDVGWNDWIVAPPGYHAFYCHGECPFPLADHLNSTNHAIVQTLVNSVNSKIPKACCVPTELSAISMLYLDENEKVVLKNYQDMVVEGCGCRRRPKGRGKRRREKQRPTDCHL SEQ ID NO: 12: human PlGF2₁₂₃₋₁₄₄ - BMP-2RRRPKGRGKRRREKQRPTDCHLSCKRHPLYVDFSDVGWNDWIVAPPGYHAFYCHGECPFPLADHLNSTNHAIVQTLVNSVNSKIPKACCVPTELSAISMLYLDENEKVVLKNYQDMV VEGCGCRSEQ ID NO: 13: human BMP-2-PlGF2_(123-144*)QAKHKQRKRLKSSCKRHPLYVDFSDVGWNDWIVAPPGYHAFYCHGECPFPLADHLNSTNHAIVQTLVNSVNSKIPKACCVPTELSAISMLYLDENEKVVLKNYQDMVVEGCGCRRRPKGRGKRRREKQRPTDSHL

Example 4

Cytokines modified with PlGF2₁₂₃₋₁₄₄, or PlGF2_(123-144*) displayenhanced affinity for ECM components.

The binding of various cytokines modified with PlGF2123-144(*) tovarious ECM proteins and heparan sulfate was tested, with the resultsdepicted in FIG. 4 panels a and b. Dissociation constants weredetermined as shown in Table 1, which sets forth thecytokines-PlGF2_(123-144(*)) affinity constants to various ECM proteinsand heparan sulfate, measured by ELISA. The dissociation constant(K_(D)) was obtained by non-linear regression using A450nm=Bmax*[concentration]/(K_(D)+[concentration]). The affinity to ECMprotein and heparan sulfate of cytokines modified withPlGF2_(123-144(*)) (VEGF-A121-PlGF2₁₂₃₋₁₄₄, PDGF-BB-PlGF2₁₂₃₋₁₄₄, andBMP-2-PlGF2_(123-144*)) was observed to be much higher (lower K_(D))than wild-type cytokines. As such, the affinity of PlGF2 for ECMproteins was conferred upon VEGF-A165, PDGF-BB, and BMP-2 by fusion ofthe PlGF2₁₂₃₋₁₄₄ to VEGF-A165, PDGF-BB, and BMP-2, respectively.

TABLE 1 Heparan KD (nM) Fibronectin Vitronectin Tenascin C OsteopontinFibrinogen Collagen I sulfate VEGF-A165 97.2 ± 10.4 70.9 ± 11.3 115.3 ±15.7 71.0 ± 8.4 301.5 ± 73.0  >500 60.9 ± 9.7  VEGF-A-PIGF-2₁₂₃₋₁₄₄ 11.2± 3.3  2.8 ± 0.3 18.0 ± 1.2  26.4 ± 13.2 5.8 ± 0.6 123.9 ± 16.1 5.9 ±0.5 PDGF-BB 11.6 ± 1.4  10.5 ± 1.0  19.0 ± 2.8 20.3 ± 2.2 250.4 ±57.6  >500 42.3 ± 6.3  PDGF-BB-PIGF-2₁₂₃₋₁₄₄ 4.5 ± 0.3 1.2 ± 0.1  6.3 ±0.6  3.3 ± 0.5 3.2 ± 0.2  96.3 ± 13.4 4.8 ± 0.4 BMP-2 19.2 ± 2.3  94.7 ±12.8 25.5 ± 2.1 47.8 ± 4.2 47.1 ± 4.5  >500 17.1 ± 1.9 BMP-2-PIGF-2_(123-144*) 5.2 ± 0.4 2.4 ± 0.2  6.9 ± 0.7 11.2 ± 1.1 2.0 ±0.1 101.7 ± 17.9 2.8 ± 0.3 PIGF-2 7.2 ± 1.1 2.0 ± 0.2 10.1 ± 1.0 13.1 ±1.4 4.5 ± 0.6 126.4 ± 15.7 4.6 ± 0.4

Example 5

Design of ECM-binding cytokines fused to PlGF2_(123-144(*)) or with acytokine domain substituted with PlGF2123-133 (*).

Sequences encoding for molecular fusions, in particular fusion proteins,of cytokines and the PlGF2_(123-144(*)) domain were amplified by thepolymerase chain reaction and were assembled into the mammalianexpression vector pXLG, in order to obtain cytokine-PlGF2_(123-144(*))or PlGF2_(123-144(*))-cytokine. A fusion protein betweenPlGF2_(123-144(*)) and the human forms of IGF-I, TGF-β1, TGF-β2, BDNF,and NT-3 are designed in SEQ ID NO:s 15, 17, 18, 20, 22, and 24. Ashorter sequence from PlGF2_(123-144(*)) can also be used. SEQ ID NO:s1-20 were actually made, and SEQ ID NO: Nos 21-24 are shown as examplesof further embodiments.

SEQ ID NO: 14: human IGF-I:GPETLCGAELVDALQFVCGDRGFYFNKPTGYGSSSRRAPQTGIVDECCFRSCDLRRLEM YCAPLKPAKSASEQ ID NO: 15: human IGF-I-PlGF2₁₂₃₋₁₄₄:GPETLCGAELVDALQFVCGDRGFYFNKPTGYGSSSRRAPQTGIVDECCFRSCDLRRLEMYCAPLKPAKSARRRPKGRGKRRREKQRPTDCHL SEQ ID NO: 16: human TGF-β1:ALDTNYCFSSTEKNCCVRQLYIDFRKDLGWKWIHEPKGYHANFCLGPCPYIWSLDTQYSKVLALYNQHNPGASAAPCCVPQALEPLPIVYYVGRKPKVEQLSNMIVRSCKCSSEQ ID NO: 17: human TGF-β1-PlGF2₁₂₃₋₁₄₄:ALDTNYCFSSTEKNCCVRQLYIDFRKDLGWKWIHEPKGYHANFCLGPCPYIWSLDTQYSKVLALYNQHNPGASAAPCCVPQALEPLPIVYYVGRKPKVEQLSNMIVRSCKCSRRRPKGRGKRRREKQRPTDCHL SEQ ID NO: 18: human PlGF2_(123-144*)-TGF-β1:RRRPKGRGKRRREKQRPTDSHLALDTNYCFSSTEKNCCVRQLYIDFRKDLGWKWIHEPKGYHANFCLGPCPYIWSLDTQYSKVLALYNQHNPGASAAPCCVPQALEPLPIVYYVGRKPKVEQLSNMIVRSCKCS SEQ ID NO: 19: human TGF-β2:ALDAAYCFRNVQDNCCLRPLYIDFKRDLGWKWIHEPKGYNANFCAGACPYLWSSDTQHSRVLSLYNTINPEASASPCCVSQDLEPLTILYYIGKTPKIEQLSNMIVKSCKCSSEQ ID NO: 20: human PlGF2_(123-144*)-TGF-β2RRRPKGRGKRRREKQRPTDSHLALDAAYCFRNVQDNCCLRPLYIDFKRDLGWKWIHEPKGYNANFCAGACPYLWSSDTQHSRVLSLYNTINPEASASPCCVSQDLEPLTILYYIGKTPKIEQLSNMIVKSCKCS SEQ ID NO: 21: human BDNFHSDPARRGELSVCDSISEWVTAADKKTAVDMSGGTVTVLEKVPVSKGQLKQYFYETKCNPMGYTKEGCRGIDKRHWNSQCRTTQSYVRALTMDSKKRIGWRFIRIDTSCVCTLTIKR GRSEQ ID NO: 22: human BDNF-PlGF2₁₂₃₋₁₄₄HSDPARRGELSVCDSISEWVTAADKKTAVDMSGGTVTVLEKVPVSKGQLKQYFYETKCNPMGYTKEGCRGIDKRHWNSQCRTTQSYVRALTMDSKKRIGWRFIRIDTSCVCTLTIKRGRRRPKGRGKRRREKQRPTDCHL SEQ ID NO: 23: human NT-3:YAEHKSHRGEYSVCDSESLWVTDKSSAIDIRGHQVTVLGEIKTGNSPVKQYFYETRCKEARPVKNGCRGIDDKHWNSQCKTSQTYVRALTSENNKLVGWRWIRIDTSCVCALSRKIGR TSEQ ID NO: 24: human NT-3-PlGF2₁₂₃₋₁₄₄YAEHKSHRGEYSVCDSESLWVTDKSSAIDIRGHQVTVLGEIKTGNSPVKQYFYETRCKEARPVKNGCRGIDDKHWNSQCKTSQTYVRALTSENNKLVGWRWIRIDTSCVCALSRKIGRTRRRPKGRGKRRREKQRPTDCHL

Example 6

Activity of cytokines fused to PlGF2₁₂₃₋₁₄₄

FIG. 5 sets forth the results. In vitro, PlGF2₁₂₃₋₁₄₄-fused growthfactors (GFs) showed similar bioactivity compared to wild-type GFs.Human ECs were stimulated with VEGF-A121, VEGF-A165, orVEGF-A-PlGF2₁₂₃₋₁₄₄, and human mesenchymal stem cells were stimulatedwith PDGF-BB or PDGF-BB-PlGF2₁₂₃₋₁₄₄. Phosphorylated GF receptors(VEGFR-2 and PDGFR-13) were quantified by ELISA (n=3, mean±SEM). Theinsertion of the PlGF2₁₂₃₋₁₄₄ into VEGF-A and PDGF-BB did not altertheir signaling. Moreover, the insertion of PlGF2₁₂₃₋₁₄₄ into VEGF-A121increased its activity to the level of VEGF-A165. BMP-2-PlGF2_(123-144*)was evaluated by its ability to promote ALP activity in humanmesenchymal stem cells (induction of osteoblastic differentiation).Cellular ALP was quantified after 14 days of culture in presence ofBMP-2 or BMP-2-PlGF2_(123-144*). No differences in cell number and ALPactivity were observed between cells treated with BMP-2 orBMP-2-PlGF2_(123-144*).

Example 7

In vivo retention of cytokines fused to PlGF2_(123-144(*))

Results are shown in FIG. 6. ECM super-affinity cytokine variants werecreated that bind to and are retained by ECM molecules in vivo. Forexample, when injected subcutaneously in the back skin of mice,VEGF-A165 rapidly disappeared from the injection site, with only 10%remaining in the skin tissue after 3 days. In contrast, about 50% of theinjected VEGF-A-PlGF2₁₂₃₋₁₄₄ remained after 3 days, and more than 10%could be detected after 6 days. Additionally, in the back skin orcalvarium of mice filled with a fibrin matrix containing wild-type orPlGF2₁₂₃₋₁₄₄-fused cytokines, low amounts of wild-type cytokines weredetectable within the delivery site after 3 and 6 days, whilePlGF2₁₂₃₋₁₄₄-fused cytokines were significantly retained in the fibrinmatrix and within the tissue surrounding the defects.

Example 8

Treatment of skin wounds with fibrin matrix comprising cytokines fusedto PlGF2₁₂₃₋₁₄₄.

Results are shown in FIG. 7. Preclinical evaluations of cytokines forchronic skin-wound healing are generally performed in rodents and mostcommonly in the db/db diabetic mouse (Hanft J R, et al., 2008; Robson MC, et al., 1992; Robson M C, et al., 1992; Robson M C, et al., 2001),despite the fact that the optimal disease model does not yet exist forhuman chronic wounds. Nevertheless, there is consensus that thegenetically modified db/db mouse represents a clinically relevant modelfor diabetes-impaired skin-wound healing (Davidson J M, 1998; Sullivan SR, et al., 2004). Success in the db/db mouse model directly opens theway for clinical trials (Hanft J R, et al., 2008; Robson M C, et al.,1992). Full-thickness back-skin wounds were treated with a roughly100-fold lower dose of cytokines (200 ng of each PDGF-BB and VEGF-A,combined) delivered once in a fibrin matrix or simply applied topicallythree to four times. These low doses of wild-type PDGF-BB and VEGF-A(delivered in fibrin or topically) did not significantly enhance woundhealing compared to untreated or fibrin alone-treated wounds asindicated by either extent of wound closure (the latter indicated byre-epithelialization) or amount of granulation tissue. In contrast,wounds treated with the engineered ECM super-affinity PlGF2₁₂₃₋₁₄₄-fusedPDGF-BB and VEGF-A led to significantly faster wound closure and to moregranulation tissue, both topically and in fibrin. Because angiogenesisis a crucial step in sustaining newly formed granulation tissue (GunnerG C, et al., 2008), we focused on the extent to which angiogenesisdiffered between the treatments. Immunohistological analysis for CD31(highly expressed by ECs) and desmin (expressed by smooth muscle cells(SMCs) stabilizing blood vessels) revealed that angiogenesis within thegranulation tissues was much more pronounced when PlGF2₁₂₃₋₁₄₄-fused GFswere delivered. For example, 20 μg/wound of VEGF-A165 or 10 μg/wound ofPDGF-BB (REGRANEX®) applied topically for five consecutive days has beenreported to be efficient in the db/db mouse (Chan R K, et al., 2006;Galiano R D, et al., 2004).

Example 9

Vascular permeability induced by VEGF-A fused to PlGF2₁₂₃₋₁₄₄.

Results are shown in FIG. 8. VEGF-A-PlGF2₁₂₃₋₁₄₄ induces much lessvascular permeability than the same dose of wild-type VEGF-A165 (10 μg).Vascular permeability was measured in the mouse ear skin. Permeabilityinduced by VEGF-A was visualized by the red-labeled dextran leaking fromthe vessels. VEGF-A165 was compared to VEGF-A-PlGF2₁₂₃₋₁₄₄ Images of themouse ear skin vasculature were analyzed after VEGF-A application. Theresults indicated that this approach could resolve a major problem thathas arisen in translating VEGF-A to clinical use. Indeed, while VEGF-Aactivation of VEGF-receptor 2 (VEGF-R2) may be a powerful approach topromote angiogenesis, actual administration of VEGF-A has been shown torapidly induce vascular permeability, which leads to systemichypotension and edema; this phenomenon has been the dose-limiting toxicresponse in peripheral and cardio-vascular applications (Simons M andWare J A, 2003) and presents serious issues in regenerative medicine.Because VEGF-A-PlGF2₁₂₃₋₁₄₄ has an enhanced capacity to bind endogenousECM, VEGF-A-PlGF2₁₂₃₋₁₄₄ might induce less vascular permeability. In amodel of dextran extravasation from vessels in the skin of the mouse ear(Kilarski W W, et al., 2013), the rate of leakage due to application of10 μg VEGF-A-PlGF2₁₂₃₋₁₄₄ was only 19±7% of that due to application ofwild-type VEGF-A165, even though it showed equivalent activity inphosphorylation of VEGFR-2 as VEGF-A165. As such, engineering of VEGF-Ato form VEGF-A-PlGF2₁₂₃₋₁₄₄ appears to decouple angiogenesis (as shownin the model of skin wound healing) from hyper-permeability, potentiallysolving a major problem with VEGF-A's clinical translation.

Example 10

Treatment of bone defects with fibrin matrix comprising cytokines fusedto PlGF2₁₂₃₋₁₄₄

Results are shown in FIG. 9. Cytokines fused to PlGF2₁₂₃₋₁₄₄ are usefulin engineering a microenvironment for bone healing. Since, the cytokinesBMP-2 and PDGF-BB are beneficial for bone repair (Hollinger J O, et al.,2008), fibrin matrices containing a low dose of combined BMP-2 (200 ng)and PDGF-BB (200 ng), were evaluated for bone repair. A relevant modelto illustrate human translational potential is the critical-sizecalvarial defect in a skeletally mature rat, which is a standard andclinically relevant model for nonunion bone healing (Hollinger J O andKleinschmidt J C, 1990; Muschler G F, et al.). Preclinical evaluationsof bone repair materials and osteoinductive proteins commonly includecritical-size bone defect models, such as the critical-size calvarialdefect in the rat (Hollinger J O and Kleinschmidt J C, 1990). Acombination of BMP-2-PlGF2_(123-144*) and PDGF-BB-PlGF2₁₂₃₋₁₄₄ (200 ngof each) were delivered in a fibrin matrix, or delivered topically tothe dura prior to surgical skin closure at a somewhat higher dose (1 μgof each, combined). After 4 weeks, bone healing—characterized by bonetissue deposition and coverage of the defects—was analyzed usingmicrocomputed tomography (microCT). The delivery of wild-type GFs aloneor within fibrin slightly increase bone healing when compared to thedefects without treatment or treated with fibrin only. In contrast,treatment with PlGF2₁₂₃₋₁₄₄-fused GFs led to a marked increase of bonetissue deposition compared to wild-type GF. For comparison, 1 μg isusually insufficient to treat calvarial defect of 6 mm in the rat(Schmoekel H G, et al., 2005), and milligram-quantities of BMP-2 areneeded to treat tibial fractures in humans (Gautschi O P, et al., 2007).

Example 11

Engineering the adhesion domain of ECM proteins fused to thePlGF2₁₂₃₋₁₄₄ domain

To incorporate a cell adhesion-promoting domain within fibrin matrices,molecular fusions of FN III10 and FN III9-10 and PlGF2₁₂₃₋₁₄₄ areuseful. SEQ ID NO: 25 presents a design using FN III9-10 that may easilybe made by the artisan reading this specification.

SEQ ID NO: 25: human FN III9-10-PlGF2₁₂₃₋₁₄₄GLDSPTGIDFSDITANSFTVHWIAPRATITGYRIRHHPEHFSGRPREDRVPHSRNSITLTNLTPGTEYVVSIVALNGREESPPLIGQQSTVSDVPRDLEVVAATPTSLLISWDAPAVTVRYYRITYGETGGNSPVQEFTVPGSKSTATISGLKPGVDYTITVYAVTGRGDSPASSKPISINYRTRRRPKGRGKRRREKQRPTDCHL

Example 12

Engineering a protein drug for sustained release from fibrin matricesutilizing the PlGF2₁₂₃₋₁₄₄ domain

PTH1-34 is known to be useful in regulating system bone mass, and localapplication of fibrin-binding PTH1-34 variants has been shown tostimulate local bone formation (Arrighi I, et al., 2009). A fusionprotein of PTH1-34 and PlGF2₁₂₃₋₁₄₄ is designed as in SEQ ID NO: 27;this protein may be readily made by the artisan reading thisspecification.

SEQ ID NO: 26: human PTH1-34 SVSEIQLMHNLGKHLNSMERVEWLRKKLQDVHNFSEQ ID NO: 27: human PTH1-34-PlGF2₁₂₃₋₁₄₄SVSEIQLMHNLGKHLNSMERVEWLRKKLQDVHNFRRRPKGRGKRRREKQ RPTDCHL

Example 13

Engineering a protease inhibitor fused to PlGF2₁₂₃₋₁₄₄.

Fibrin has been long used clinically for hemostasis and sealing, yetextension of use in other applications has been limited due to itsrelatively rapid resorption in vivo, even with addition of aprotinin orother protease inhibitors. Retention of the protease inhibitor aprotininin fibrin matrices can be accomplished by design and use of a fusion ofaprotinin with PlGF2₁₂₃₋₁₄₄. This fusion is designed as in SEQ ID NO:29; this protein may be readily made by the artisan reading thisspecification.

SEQ ID NO: 28: bovine aprotininRPDFCLEPPYTGPCKARIIRYFYNAKAGLCQTFVYGGCRAKRNNFKSAEDCMRTCGGASEQ ID NO: 29: bovine aprotinin-PlGF2₁₂₃₋₁₄₄RPDFCLEPPYTGPCKARIIRYFYNAKAGLCQTFVYGGCRAKRNNFKSAEDCMRTCGGARRRPKGRGKRRREKQRPTDCHL

Example 14

Engineering a chemokine fused to PlGF2₁₂₃₋₁₄₄

Fibrin-binding chemokines are useful in immunomodulation andimmunotherapy, including vaccination. Fusions of the chemokines CXCL10,CXCL11, IFN-γ, and CCL21 with PlGF2₁₂₃₋₁₄₄ are designed in SEQ ID NO:31, 33, 35 and 37, respectively. These proteins may be readily made bythe artisan reading this specification.

SEQ ID NO: 30: human CXCL10VPLSRTVRCTCISISNQPVNPRSLEKLEIIPASQFCPRVEIIATMKKKGEKRCLNPESKAIKNLLKAVSKERSKRSP SEQ ID NO: 31: human CXCL10-PlGF2₁₂₃₋₁₄₄VPLSRTVRCTCISISNQPVNPRSLEKLEIIPASQFCPRVEIIATMKKKGEKRCLNPESKAIKNLLKAVSKERSKRSPRRRPKGRGKRRREKQRPTDCHLSEQ ID NO: 32: human CXCL11-PlGF2₁₂₃₋₁₄₄FPMFKRGRCLCIGPGVKAVKVADIEKASIMYPSNNCDKIEVIITLKENKGQRCLNPKSKQARLIIKKVERKNF SEQ ID NO: 33: human CXCL11-PlGF2₁₂₃₋₁₄₄FPMFKRGRCLCIGPGVKAVKVADIEKASIMYPSNNCDKIEVIITLKENKGQRCLNPKSKQARLIIKKVERKNFRRRPKGRGKRRREKQRPTDCHL SEQ ID NO: 34: human IFN-γQDPYVKEAENLKKYFNAGHSDVADNGTLFLGILKNWKEESDRKIMQSQIVSFYFKLFKNFKDDQSIQKSVETIKEDMNVKFFNSNKKKRDDFEKLTNYSVTDLNVQRKAIHELIQVMAELSPAAKTGKRKRSQMLFRG SEQ ID NO: 35: human IFN-γ-PlGF2₁₂₃₋₁₄₄QDPYVKEAENLKKYFNAGHSDVADNGTLFLGILKNWKEESDRKIMQSQIVSFYFKLFKNFKDDQSIQKSVETIKEDMNVKFFNSNKKKRDDFEKLTNYSVTDLNVQRKAIHELIQVMAELSPAAKTGKRKRSQMLFRGRRRPKGRGKRRREKQRPTDCHL SEQ ID NO: 36: human CCL21SDGGAQDCCLKYSQRKIPAKVVRSYRKQEPSLGCSIPAILFLPRKRSQAELCADPKELWVQQLMQHLDKTPSPQKPAQGCRKDRGASKTGKKGKGSKGCKRTERSQTPKGPSEQ ID NO: 37: human CCL21-PlGF2₁₂₃₋₁₄₄SDGGAQDCCLKYSQRKIPAKVVRSYRKQEPSLGCSIPAILFLPRKRSQAELCADPKELWVQQLMQHLDKTPSPQRRRPKGRGKRRREKQRPTDCHL

Example 15

Engineering a peptide and a protein antigen fused to PlGF2₁₂₃₋₁₄₄.

L-dopachrome tautomerase, also called tyrosinase-related protein 2(TRP-2), has been identified as a human melanoma-associated antigen andit is expressed by most melanomas as well as normal melanocytes inhumans and mice. Human TRP-2 protein or peptide-pulsed dendritic cellshave shown the induction of specific CD8+T cells, suggesting thatself-reactive TRP-2 CD81 T-cell epitope 180-188 (trp2)-specific cellsmay escape thymic selection (Sierro S R, et al., 2011). Thefibrin-binding affinity of PlGF2₁₂₃₋₁₄₄ can be used to incorporateantigens into fibrin matrices used as vaccines. An antigen relevant forcancer vaccine in treatment of melanoma is designed as SEQ ID NO: 39,comprising a specific peptide antigen from TRP-2 and as SEQ ID NO: 41,comprising the entire protein TRP-2, in both cases fused toPlGF2₁₂₃₋₁₄₄. These examples are designed and presented to show howartisans can readily adapt these methods to use these or other antigens.

SEQ ID NO: 38: human L-dopachrome tautomerase 180-188 SVYDFFVWLSEQ ID NO: 39: human PlGF2₁₂₃₋₁₄₄/plasmin cleavage site derivedfrom factor X/L-dopachrome tautomerase 180-188RRRPKGRGKRRREKQRPTDCHLITFRSVYDFFVWLSEQ ID NO: 40: human L-dopachrome tautomeraseQFPRVCMTVDSLVNKECCPRLGAESANVCGSQQGRGQCTEVRADTRPWSGPYILRNQDDRELWPRKFFHRTCKCTGNFAGYNCGDCKFGWTGPNCERKKPPVIRQNIHSLSPQEREQFLGALDLAKKRVHPDYVITTQHWLGLLGPNGTQPQFANCSVYDFFVWLHYYSVRDTLLGPGRPYRAIDFSHQGPAFVTWHRYHLLCLERDLQRLIGNESFALPYWNFATGRNECDVCTDQLFGAARPDDPTLISRNSRFSSWETVCDSLDDYNHLVTLCNGTYEGLLRRNQMGRNSMKLPTLKDIRDCLSLQKFDNPPFFQNSTFSFRNALEGFDKADGTLDSQVMSLHNLVHSFLNGTNALPHSAANDPIFVVLHSFTDAIFDEWMKRFNPPADAWPQELAPIGHNRMYNMVPFFPPVTNEELFLTSDQLGYSYAIDLPVSVEETPGWPTTLLVVMGTLVALVGLFVLLAFLQYRRLRKGYTPLMETHLSSKRYTEEASEQ ID NO: 41: human L-dopachrome tautomerase-PlGF2₁₂₃₋₁₄₄QFPRVCMTVDSLVNKECCPRLGAESANVCGSQQGRGQCTEVRADTRPWSGPYILRNQDDRELWPRKFFHRTCKCTGNFAGYNCGDCKFGWTGPNCERKKPPVIRQNIHSLSPQEREQFLGALDLAKKRVHPDYVITTQHWLGLLGPNGTQPQFANCSVYDFFVWLHYYSVRDTLLGPGRPYRAIDFSHQGPAFVTWHRYHLLCLERDLQRLIGNESFALPYWNFATGRNECDVCTDQLFGAARPDDPTLISRNSRFSSWETVCDSLDDYNHLVTLCNGTYEGLLRRNQMGRNSMKLPTLKDIRDCLSLQKFDNPPFFQNSTFSFRNALEGFDKADGTLDSQVMSLHNLVHSFLNGTNALPHSAANDPIFVVLHSFTDAIFDEWMKRFNPPADAWPQELAPIGHNRMYNMVPFFPPVTNEELFLTSDQLGYSYAIDLPVSVEETPGWPTTLLVVMGTLVALVGLFVLLAFLQYRRLRKGYTPLMETHLSSKRYTEEARRRPKGRGKRRREKQRPTDCHL

Example 16

Engineering the Toll-like receptor agonist fused to PlGF2₁₂₃₋₁₄₄,

Vaccines with incorporated danger signals provide signals to activateimmune responses to incorporated antigens. The ECM protein fragment TNCfibrin globular domain (also referred to as the fibrinogen globe domain)is such a danger signal. The danger signal domain can be incorporatedinto fibrin matrixes by affinity of PlGF2₁₂₃₋₁₄₄ for fibrin. A fusionprotein of TNC fibrin globe (SEQ ID NO: 42) and PlGF2₁₂₃₋₁₄₄ is designedin SEQ ID NO: 43.

SEQ ID NO: 42: human TNC fibrinogen globular domainGLLYPFPKDCSQAMLNGDTTSGLYTIYLNGDKAQALEVFCDMTSDGGGWIVFLRRKNGRENFYQNWKAYAAGFGDRREEFLHWLGLDNLNKITAQGQYELRVDLRDHGETAFAVYDKFSVGDAKTRYKLKVEGYSGTAGDSMAYHNGRSFSTFDKDTDSAITNCALSYKGAFWYRNCHRVNLMGRYGDNNHSQGVNWFHWKGHEHSIQFAEMKLRPSNFRNLEGRRKRASEQ ID NO: 43: human TNC fibrinogen globular domain-PlGF2₁₂₃₋₁₄₄GLLYPFPKDCSQAMLNGDTTSGLYTIYLNGDKAQALEVFCDMTSDGGGWIVFLRRKNGRENFYQNWKAYAAGFGDRREEFLHWLGLDNLNKITAQGQYELRVDLRDHGETAFAVYDKFSVGDAKTRYKLKVEGYSGTAGDSMAYHNGRSFSTFDKDTDSAITNCALSYKGAFWYRNCHRVNLMGRYGDNNHSQGVNWFHWKGHEHSIQFAEMKLRPSNFRNLEGRRRPKGRGKRRREKQRPTDCHL

Example 17

Tissue retention of cytokines containing the PlGF2₁₂₃₋₁₄₄.

The cytokine FGF18 has been shown to lead to improved cartilage repairwhen injected in the joints of animals in osteoarthritis models (Moore EE, et al., 2005). Elimination from the site of injection limits theefficacy of this approach. An extracellular matrix-binding FGF18 variantis provided by a fusion protein between FGF18 and PlGF2₁₂₃₋₁₄₄, designedin SEQ ID NO: 45. This protein may be readily made by the artisanreading this specification, as well as other vehicles for other agentsor cytokines.

SEQ ID NO: 44: human FGF18EENVDFRIHVENQTRARDDVSRKQLRLYQLYSRTSGKHIQVLGRRISARGEDGDKYAQLLVETDTFGSQVRIKGKETEFYLCMNRKGKLVGKPDGTSKECVFIEKVLENNYTALMSAKYSGWYVGFTKKGRPRKGPKTRENQQDVHFMKRYPKGQPELQKPFKYTTVTKRSRRIRP THPASEQ ID NO: 45: human FGF18-PlGF2₁₂₃₋₁₄₄EENVDFRIHVENQTRARDDVSRKQLRLYQLYSRTSGKHIQVLGRRISARGEDGDKYAQLLVETDTFGSQVRIKGKETEFYLCMNRKGKLVGKPDGTSKECVFIEKVLENNYTALMSAKYSGWYVGFTKKGRPRKGPKTRENQQDVHFMKRYPKGQPELQKPFKYTTVTKRSRRIRPTHPARRRPKGRGKRRREKQRPTDCHL

One can make other FGF-18 variants in which the native domain withinFGF-18 is replaced with a PlFG-2 domain. A hypothetical heparin bindingdomain exists within FGF-18, namely KRYPKGQPELQKPFKYTTVTKRSRRIR (SEQ IDNO:56), the key domain of which is KRSRRIR (SEQ ID NO:57). Thus, onesubstitutional implementation is to replace the KRSRRIR domain with aPlGF2 domain, for example SEQ ID NO: 53.

SEQ ID NO: 53: human FGF18-PlGF2₁₂₃₋₁₃₈EENVDFRIHVENQTRARDDVSRKQLRLYQLYSRTSGKHIQVLGRRISARGEDGDKYAQLLVETDTFGSQVRIKGKETEFYLCMNRKGKLVGKPDGTSKECVFIEKVLENNYTALMSAKYSGWYVGFTKKGRPRKGPKTRENQQDVHFMKRYPKGQPELQKPFKYTTVTRRRPKGR GKRRREKQRPTHPA

A second substitutional example is to extend the PlGF2 domain on its Nterminal end so as to better match the amino acids within FGF-18, SEQ IDNO:54, using PlGF2₁₁₉₋₁₄₄, namely MKPERRRPKGRGKRRREKQRPTDCHL (SEQ IDNO:55) Other possible implementations exist as well.

SEQ ID NO: 54: human FGF18-PlGF2₁₂₁₋₁₃₈EENVDFRIHVENQTRARDDVSRKQLRLYQLYSRTSGKHIQVLGRRISARGEDGDKYAQLLVETDTFGSQVRIKGKETEFYLCMNRKGKLVGKPDGTSKECVFIEKVLENNYTALMSAKYSGWYVGFTKKGRPRKGPKTRENQQDVHFMKPERRRPKGRGKRRREKQRPTHP A

The cytokine TGF-β3 has been extensively explored in limitation ofdermal scars, for example post-surgical incisional scars. The cytokinehas been injected along such incision lines (Ferguson M W, et al.,2009). Elimination from the site of injection limits the efficacy ofthis approach. An extracellular matrix-binding TGF-β3 variant isprovided by a fusion protein between TGF-β3 and PlGF2_(123-144*),designed in SEQ ID NO: 47. This protein may be readily made by theartisan reading this specification, as well as other vehicles for otheragents or cytokines.

SEQ ID NO: 46: human TGF-β3:ALDTNYCFRNLEENCCVRPLYIDFRQDLGWKWVHEPKGYYANFCSGPCPYLRSADTTHSTVLGLYNTLNPEASASPCCVPQDLEPLTILYYVGRTPKVEQLSNMVVKSCKCSSEQ ID NO: 47: human PlGF2_(123-144*)-TGF-β3:RRRPKGRGKRRREKQRPTDSHLALDTNYCFRNLEENCCVRPLYIDFRQDLGWKWVHEPKGYYANFCSGPCPYLRSADTTHSTVLGLYNTLNPEASASPCCVPQDLEPLTILYYVGRTPKVEQLSNMVVKSCKCS

Further Disclosure

A biologic delivery vehicle comprising a molecular fusion of abiological agent and a peptide comprising a sequence or subsequence ofat least 5, or 6, or 7, residues of a sequence chosen from the groupconsisting of SEQ ID NO: 4 having from 0 to about 15% conservativesubstitutions and SEQ ID NO:5 having from 0 to about 15% conservativesubstitutions. Said peptide exhibits specific binding to fibrinogen. 2.The vehicle of 1 with the peptide exhibiting specific binding tofibrinogen, fibronectin, vitronectin, tenascin C, osteopontin, fibrin,and heparan sulfate. 3. The vehicle of 1 or 2 wherein the peptide has aspecific binding to fibrinogen with a dissociation constant (Kd) of lessthan about 24, about 40, or about 100 nM. 4. The vehicle of any of 1-3wherein the biological agent is chosen from the group consisting of aprotein, a protein drug, a marker, an immunoagent, a chemokine, acytokine, and a cell adhesion peptide. 5. The vehicle of any of 1-4wherein the molecular fusion comprises a recombinant protein comprisingthe biologic agent and the peptide. 6. The vehicle of any of 1-4 whereinthe molecule fusion comprises a linker covalently bonded with the agentand the peptide. 7. The vehicle of 6 wherein the linker comprises apolymer having a first covalent bond to an N-terminus or a C-terminus ofthe peptide and a second covalent bond to the biological agent. 8. Thevehicle of any of 1-4 wherein the molecule fusion comprises a particlethat is joined to the biological agent and to the peptide. 9. Thevehicle of 8 wherein the particle is chosen from the group consisting ofa microparticle, a nanoparticle, a polymersome, a micelle, and aliposome. 10. The vehicle of 8 being soluble or a colloid in aphysiological solution with all components of the vehicle being lessthan about 500 μm in maximum dimension. 11. The vehicle of 8 wherein theparticle comprises a plurality of amines and/or thiols that participatein a covalent bond to the biological and/or the peptide. 12. The vehicleof any of 1-11 wherein the biological agent comprises a cytokine chosenfrom the group consisting of epidermal growth factors (EGFs), VEGFs,VEGF-A, VEGF-C, PDGFs, PDGF-AB, PDGF-BB, FGFs, FGF-2, FGF-18, IGFs,IGF-1, BMPs, BMP-2, BMP-7, TGF-βs, TGF-β1, TGF-β2, TGF-β3, theneurotrophins, NT-3, and BDNF 13. The vehicle of any of 1-11 wherein thebiological agent comprises a chemokine chosen from the group consistingof interferons, INF-beta, CXCL chemokines, CXCL10, CXCL11, CXCL12, CCLchemokines, and CCL21 14. The vehicle of any of 1-11 wherein thebiological agent comprises an immunoagent 15. The vehicle of 14 whereinthe immunoagent provides an antigen. 16. The vehicle of 15 wherein theantigen is at least a portion of tyrosine-related protein 2 (TRP-2). 17.The vehicle of 14 wherein the immunoagent comprises a danger signal 18.The vehicle of 17 wherein the danger signal comprises a globular domainof tenascin or an EDA domain of fibronectin 19. The vehicle of any of1-11 wherein the biological agent comprises a cell adhesion peptide. 20.The vehicle of 19 wherein the cell adhesion peptide comprises a ligandfor a cell surface receptor chosen from the group consisting of integrinand cadherin. 21. The vehicle of 19 wherein the cell adhesion peptidecomprises a cell adhesion motif chosen from the group consisting afibronectin cell adhesion domain, a vitronectin cell adhesion domain, alaminin cell adhesion domain, a tenascin cell adhesion domain, afibronectin FN III10 domain, a fibronectin FN III9-10 domain, a tenascindomain taken from one or more of a fibronectin type III repeats 1 to 5,a 3^(rd) FN type III repeat of tenascin C, a FN III9-10 domain oftenascin, RGD, RGDS, RGDSP, KLDAPT, IDGIHEL, IDAPS, LDV, and REDV. 22.The vehicle of any of 1-11 wherein the biologic agent comprises aprotease inhibitor.

23. A biomolecule comprising a cytokine derivatized to include a PlGF2domain. 24. The biomolecule of 23 wherein an endogenousextracellular-matrix binding domain of the cytokine has been removed ordisabled 25. The biomolecule of 23 or 24 wherein the derivatizedcytokine has specific binding to an extracellular matrix moleculeselected from the group of fibrinogen, fibronectin, vitronectin,tenascin C, osteopontin and fibrin. 26. The biomolecule of 25 whereinthe dissociation constant of binding of the derivatized cytokine withthe extracellular matrix molecule is less than 50% of a dissociationconstant of binding of the underivatized cytokine to the sameextracellular matrix molecule. 27. The biomolecule of any of 23-26wherein the cytokine is selected from the group consisting of epidermalgrowth factors (EGFs), VEGFs, VEGF-A, VEGF-C, PDGFs, PDGF-AB, PDGF-BB,the FGFs, FGF-2, FGF-18, IGFs, IGF-1, BMPs, BMP-2, BMP-7, TGF-βs,TGF-β1, TGF-β2, TGF-β3, neurotrophins, NT-3, and BDNF. 27. Thebiomolecule of any of 23-27 wherein the biomolecule is a fusion proteinor a molecular fusion that further comprises a biologic agent.

28. An isolated polypeptide comprising a sequence or subsequence of atleast 6 residues (or at lest 5, or at least 7, or at least 8) of asequence chosen from the group consisting of SEQ ID NO: 4 having from 0to about 15% conservative substitutions and SEQ ID NO:5 having from 0 toabout 15% conservative substitutions, said peptide exhibiting specificbinding to fibrinogen. 29. The polypeptide of 28 further exhibitingspecific binding to fibronectin, vitronectin, tenascin C, osteopontin,and fibrin. 30. The polypeptide of 28 or 29 wherein the specific bindingof the polypeptide to fibrinogen has a dissociation constant (Kd) ofless than about 25 nM. 31. The polypeptide of any of 28-30 wherein thesequence is chosen from the group consisting of SEQ ID NO:4 and SEQ IDNO:5. 32. A fusion protein comprising the polypeptide of any of 28-31.

33. A biomaterial comprising a matrix, with the matrix comprising apeptide comprising a sequence or subsequence of at least 6 residues of asequence chosen from the group consisting of SEQ ID NO: 4 having from 0to about 15% conservative substitutions and SEQ ID NO:5 having from 0 toabout 15% conservative substitutions, said peptide exhibiting specificbinding to the matrix. 34. The biomaterial of 33 wherein the specificbinding of the peptide to the matrix has a dissociation constant (Kd) ofless than about 100 nM. 35. The biomaterial of 33 wherein the specificbinding of the peptide to the matrix has a dissociation constant (Kd) ofless than about 25 nM. 36. The biomaterial of any of 33-35 wherein thepeptide is specifically bound to the matrix and is available for bindingto biomolecules. 37. The biomaterial of 33 or 34 wherein the peptide isfree of covalent bonds to the matrix. 38. The biomaterial of any of33-37 comprising an extracellular matrix domain that specifically bindsto the peptide. 39. The biomaterial of 38 wherein the extracellularmatrix domain is a domain of a biomolecule chosen from the groupconsisting of fibrinogen, fibronectin, vitronectin, tenascin C,osteopontin, and fibrin. 40. The biomaterial of any of 33-39 comprisinghydrophilic polymers, wherein the peptide is attached to the matrixthough a transglutaminase substrate, with a bond being formed by atransglutaminase enzyme between the substrate and the polypeptide. 41.The biomaterial of 40 wherein the polymers or the peptide comprise atransglutaminase substrate that comprises NQEQVSPL (SEQ ID NO:50). 42.The biomaterial of any of 33-41 further comprising a molecular fusion ofthe peptide and a biologic agent. 43. The biomaterial of 42 wherein thebiological agent comprises a cytokine is selected from the groupconsisting of epidermal growth factors (EGFs), VEGFs, VEGF-A, VEGF-C,PDGFs, PDGF-AB, PDGF-BB, the FGFs, FGF-2, FGF-18, IGFs, IGF-1, BMPs,BMP-2, BMP-7, TGF-βs, TGF-β1, TGF-β2, TGF-β3, neurotrophins, NT-3, andBDNF. 44. The biomaterial of 42 wherein the biological agent comprises athe biological agent comprises a chemokine chosen from the groupconsisting of interferons, INF-, CXCL chemokines, CXCL10, CXCL11,CXCL12, CCL chemokines, and CCL21. 45. The biomaterial of 42 wherein thebiological agent comprises an immunoagent. 46. The biomaterial of 42wherein the immunoagent provides an antigen. 47. The biomaterial of 42wherein the antigen is at least a portion of tyrosine-related protein 2(TRP-2). 48. The biomaterial of 42 wherein the immunoagent comprises adanger signal. 49. The biomaterial of 48 wherein the danger signalcomprises a globular domain of tenascin or an EDA domain of fibronectin.50. The biomaterial of 42 wherein the biological agent comprises a celladhesion peptide. 51. The biomaterial of 42 wherein the cell adhesionpeptide comprises a ligand for a cell surface receptor chosen from thegroup consisting of integrin, cadherin. 52. The biomaterial of 42wherein the cell adhesion peptide comprises a cell adhesion motif chosenfrom the group consisting a fibronectin cell adhesion domain, avitronectin cell adhesion domain, a laminin cell adhesion domain, atenascin cell adhesion domain, a fibronectin FN III10 domain, afibronectin FN III9-10 domain, a tenascin domain taken from one or moreof a fibronectin type III repeats 1 to 5, a 3^(rd) FN type III repeat oftenascin C, a FN III9-10 domain of tenascin, RGD, RGDS, RGDSP, KLDAPT,IDGIHEL, IDAPS, LDV, and REDV. 53. The biomaterial of 42 wherein thebiologic agent comprises a protease inhibitor. 54. The biomaterial ofany of 28-53 wherein the biologic agent comprises a protease inhibitor.55. The biomaterial of 54 wherein the protease inhibitor comprisesaprotinin and the matrix comprises fibrin. 56. The biomaterial of any of28-55 further comprising a plurality of molecular fusions, with each ofthe plurality of the fusions having a distinct biologic agent fused withat least one of the peptides. 57. The biomaterial of 56 comprisingbetween 2 and 10 molecular fusions, with the biologic agent for each ofthe fusions being independently chosen. 58. The biomaterial of 57wherein the plurality of molecular fusions have a biologic agentindependently chosen from the group consisting of epidermal growthfactors (EGFs), VEGFs, VEGF-A, VEGF-C, PDGFs, PDGF-AB, PDGF-BB, FGFs,FGF-2, FGF-18, IGFs, IGF-1, BMPs, BMP-2, BMP-7, TGF-βs, TGF-β1, TGF-β2,TGF-β3, the neurotrophins, NT-3, BDNF, interferon-β, interferons, CXCLchemokines, CXCL10, CXCL11, CXCL12, CCL chemokines, and CCL21, aglobular domain, a fibronectin cell adhesion domain, a vitronectin celladhesion domain, a laminin cell adhesion domain, a tenascin celladhesion domain, a fibronectin FN 11110 domain, a fibronectin FN III9-10domain, a tenascin domain taken from one or more of a fibronectin typeIII repeats 1 to 5, a 3^(rd) FN type III repeat of tenascin C, a FNIII9-10 domain of tenascin, RGD, RGDS, RGDSP, KLDAPT, IDGIHEL, IDAPS,LDV, and REDV.

59. A medicament comprising pharmaceutically acceptable vehicle of anyof 1-22, the biomolecule of any of 23-27, the polypeptide of any of28-31, the fusion protein of 32, or the biomaterial of any of 33-58. 60.The medicament of 59 for treating a condition of disease, for woundhealing, for bone healing, or for vaccination. 61. The medicament of 59comprising a plurality of molecular fusions, with each of the pluralityof the fusions having a distinct biologic agent fused with at least oneof the polypeptides. 62. The medicament of 61 comprising between 2 and10 molecular fusions, with the biologic agent for each of the fusionsbeing independently chosen. 63. A method of treating a patient with amedicament comprising administering a pharmaceutically acceptablevehicle of any of 1-22, the biomolecule of any of 23-27, the polypeptideof any of 28-31, the fusion protein of 32, or the biomaterial of any of33-58. 64. A method of treating a patient with a medicament comprisingadministering a pharmaceutically acceptable molecular fusion of abiological agent and a peptide, or a biomaterial matrix comprising apharmaceutically acceptable molecular fusion of a biological agent and apeptide, with the polypeptide comprising a sequence or subsequence of atleast 6 residues of a sequence chosen from the group consisting of SEQID NO: 4 having from 0 to about 15% conservative substitutions and SEQID NO:5 having from 0 to about 15% conservative substitutions. 65. Themethod of 64 wherein the biologic agent provides an antigen, with thepatient being vaccinated by administration of the molecule fusion. 66.The method of 64 wherein the agent comprises a danger signal, with anantigen being administered in combination with the agent. 67. The methodof 64 wherein the molecular fusion provides for an extended release ofthe biologic agent from the site of administration. 68. The method of 64wherein the biologic agent comprises a cytokine, with the site ofadministration being chosen from the group consisting of a fistula, awound, and an ulcer. 69. A vaccine comprising any of the embodiments of1-68. 70. A matrix or system comprising any of the embodiments of 1-69for drug delivery, vaccination, wound healing, or bone healing. Anucleic acid comprising a sequence encoding a peptide or protein of anyof 1-70.

REFERENCES

All references, patents, patent applications, journal articles andpublications set forth herein are hereby incorporated by referenceherein for all purposes; in case of conflict, the instant specificationis controlling.

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1. A biologic delivery vehicle comprising a molecular fusion of abiological agent and a peptide comprising a sequence or subsequence ofat least 6 residues of a sequence chosen from the group consisting ofSEQ ID NO: 4 having from 0 to about 15% conservative substitutions andSEQ ID NO:5 having from 0 to about 15% conservative substitutions, saidpeptide exhibiting specific binding to fibrinogen.
 2. The vehicle ofclaim 1 with the peptide exhibiting specific binding to fibrinogen,fibronectin, vitronectin, tenascin C, osteopontin, fibrin, and heparansulfate.
 3. The vehicle of claim 1 wherein the peptide has a specificbinding to fibrinogen with a dissociation constant (KD) of less thanabout 100 nM.
 4. The vehicle of claim 1 wherein the biological agent ischosen from the group consisting of a protein, a protein drug, a marker,an immunoagent, a chemokine, a cytokine, and a cell adhesion peptide. 5.The vehicle of claim 1 wherein the molecular fusion comprises arecombinant protein comprising the biological agent and the peptide; alinker covalently bonded with the agent and the peptide; or a particlethat is joined to the biological agent and to the peptide.
 6. Thevehicle of claim 5 being soluble or a colloid in a physiologicalsolution with all components of the vehicle being less than about 500 μmin maximum dimension.
 7. The vehicle of claim 1 wherein the biologicalagent comprises a cytokine chosen from the group consisting of epidermalgrowth factors (EGFs), VEGFs, VEGF-A, VEGF-C, PDGFs, PDGF-AB, PDGF-BB,FGFs, FGF-2, FGF-18, IGFs, IGF-1, BMPs, BMP-2, BMP-7, TGF-βs, TGF-β1,TGF-β2, TGF-β3, the neurotrophins, NT-3, and BDNF or a chemokine chosenfrom the group consisting of interferons, INF-γ, CXCL chemokines,CXCL10, CXCL11, CXCL12, CCL chemokines, and CCL21, an immunoagent, acell adhesion peptide, or a protease inhibitor.
 8. The vehicle of claim1 wherein the biological agent comprises an immunoagent, wherein theimmunoagent provides an antigen; provides an antigen that is at least aportion of tyrosine-related protein 2 (TRP-2); comprises a dangersignal; or comprises a danger signal chosen from the group consisting ofa globular domain of tenascin and an EDA domain of fibronectin.
 9. Thevehicle of claim 1 wherein the biological agent comprises a celladhesion peptide, wherein the cell adhesion peptide comprises a ligandfor a cell surface receptor chosen from the group consisting of integrinand cadherin, or the cell adhesion peptide comprises a cell adhesionmotif chosen from the group consisting a fibronectin cell adhesiondomain, a vitronectin cell adhesion domain, a laminin cell adhesiondomain, a tenascin cell adhesion domain, a fibronectin FN 11110 domain,a fibronectin FN III9-10 domain, a tenascin domain taken from one ormore of a fibronectin type III repeats 1 to 5, a 3^(rd) FN type IIIrepeat of tenascin C, a FN III9-10 domain of tenascin, RGD, RGDS, RGDSP,KLDAPT, IDGIHEL, IDAPS, LDV, and REDV.
 10. A biomolecule comprising acytokine derivatized to include a PlGF2 domain.
 11. The biomolecule ofclaim 10 wherein an endogenous extracellular-matrix binding domain ofthe cytokine has been removed or disabled.
 12. The biomolecule of claim10 wherein the derivatized cytokine has specific binding to anextracellular matrix molecule selected from the group of fibrinogen,fibronectin, vitronectin, tenascin C, osteopontin and fibrin.
 13. Thebiomolecule of claim 10 wherein the dissociation constant of binding ofthe derivatized cytokine with the extracellular matrix molecule is lessthan 50% of a dissociation constant of binding of the underivatizedcytokine to the same extracellular matrix molecule.
 14. The biomoleculeof claim 10 wherein the cytokine is selected from the group consistingof epidermal growth factors (EGFs), VEGFs, VEGF-A, VEGF-C, PDGFs,PDGF-AB, PDGF-BB, the FGFs, FGF-2, FGF-18, IGFs, IGF-1, BMPs, BMP-2,BMP-7, TGF-βs, TGF-β1, TGF-β2, TGF-β3, neurotrophins, NT-3, and BDNF.15. The biomolecule of claim 10 further comprising a biological agent.16. An isolated polypeptide comprising a sequence or subsequence of atleast 6 residues of a sequence chosen from the group consisting of SEQID NO: 4 having from 0 to about 15% conservative substitutions and SEQID NO:5 having from 0 to about 15% conservative substitutions, saidpeptide exhibiting specific binding to fibrinogen.
 17. A fusion proteincomprising the polypeptide of claim
 16. 18. A biomaterial comprising amatrix, with the matrix comprising a peptide comprising a sequence orsubsequence of at least 6 residues of a sequence chosen from the groupconsisting of SEQ ID NO: 4 having from 0 to about 15% conservativesubstitutions and SEQ ID NO:5 having from 0 to about 15% conservativesubstitutions, said peptide exhibiting specific binding to the matrix.19. The biomaterial of claim 18 wherein the peptide is specificallybound to the matrix and is available for binding to biomolecules. 20.The biomaterial of claim 18 further comprising a plurality of molecularfusions, with each of the plurality of the fusions having a distinctbiologic agent fused with at least one of the peptides.
 21. A method oftreating a patient with a medicament comprising administering apharmaceutically acceptable molecular fusion of a biological agent and apeptide, or a biomaterial matrix comprising a pharmaceuticallyacceptable molecular fusion of a biological agent and a peptide, withthe polypeptide comprising a sequence or subsequence of at least 6residues of a sequence chosen from the group consisting of SEQ ID NO: 4having from 0 to about 15% conservative substitutions and SEQ ID NO:5having from 0 to about 15% conservative substitutions.
 22. The method ofclaim 21 wherein the biologic agent provides an antigen, with thepatient being vaccinated by administration of the molecular fusion. 23.The method of claim 21 wherein the agent comprises a danger signal, withan antigen being administered in combination with the agent.
 24. Themethod of claim 21 wherein the molecular fusion provides for an extendedrelease of the biologic agent from the site of administration.
 25. Themethod of claim 21 wherein the biologic agent comprises a cytokine, withthe site of administration being chosen from the group consisting of afistula, a wound, and an ulcer.